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See other ATP2A1 CNV Assays ›
Gene Symbol
ATP2A1
Assay Reference Genome
Location

Chr.16:28882603 on build GRCh38
Cytoband
16p11.2
Assay ID Hs01960124_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 487

Gene Name:

 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

Gene Aliases:

 ATP2A, SERCA1

Location:

 Chr.16:28878488-28904509 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 6 - Intron 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP2A1 NM_001286075.1 NP_001273004.1
NM_004320.4 NP_004311.1
NM_173201.3 NP_775293.1
AK128456.1
AK291314.1
AL706356.1
BC037354.1 AAH37354.1
BX537389.1 CAD97631.1
BX537784.1 CAD97841.1
BX647365.1
BX647366.1
BX647367.1
BX648544.1
BX649072.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4987n54 Chr.16:28824884 - 29032129 on Build GRCh38 Gain SPNS1 ATP2A1-AS1 LAT MIR4517 NFATC2IP ATP2A1 RABEP2 SH2B1 MIR4721 ATXN2L CD19 TUFM
esv3892826 Chr.16:28814728 - 29032129 on Build GRCh38 Gain+Loss SPNS1 ATP2A1-AS1 LAT MIR4517 NFATC2IP ATP2A1 RABEP2 SH2B1 MIR4721 ATXN2L CD19 TUFM
esv3638349 Chr.16:28860611 - 28907894 on Build GRCh38 Gain ATP2A1-AS1 ATP2A1 RABEP2 SH2B1
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss XPO6 NPIPB6 MIR6862-2 NPIPB8 RABEP2 SULT1A2 LOC101928215 TUFM SULT1A1 SPNS1 CLN3 LAT MIR6862-1 NUPR1 ATP2A1 SGF29 EIF3CL NFATC2IP NPIP SH2B1 MIR4721 EIF3C ATP2A1-AS1 IL27 SBK1 RRN3P2 MIR4517 NPIPB9 ATXN2L APOBR CD19
nsv519100 Chr.16:28826194 - 29032129 on Build GRCh38 Gain SPNS1 ATP2A1-AS1 LAT MIR4517 NFATC2IP ATP2A1 RABEP2 SH2B1 MIR4721 ATXN2L CD19 TUFM
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain MIR6862-2 NPIPB8 RABEP2 SULT1A2 LOC101928215 TUFM SULT1A1 SPNS1 CLN3 LAT MIR6862-1 NUPR1 ATP2A1 SGF29 EIF3CL NFATC2IP NPIP SH2B1 MIR4721 EIF3C ATP2A1-AS1 LOC107984832 IL27 RRN3P2 MIR4517 NPIPB9 ATXN2L APOBR CD19
dgv2831n100 Chr.16:28812594 - 29032542 on Build GRCh38 Gain SPNS1 ATP2A1-AS1 LAT MIR4517 NFATC2IP ATP2A1 RABEP2 SH2B1 MIR4721 ATXN2L CD19 TUFM
esv3570454 Chr.16:28799004 - 29032129 on Build GRCh38 Gain SPNS1 ATP2A1-AS1 LAT MIR4517 NFATC2IP ATP2A1 RABEP2 SH2B1 MIR4721 ATXN2L CD19 TUFM
nsv571805 Chr.16:28824174 - 29032129 on Build GRCh38 Loss SPNS1 ATP2A1-AS1 LAT MIR4517 NFATC2IP ATP2A1 RABEP2 SH2B1 MIR4721 ATXN2L CD19 TUFM
dgv2830n100 Chr.16:28620264 - 29032542 on Build GRCh38 Gain MIR6862-2 NPIPB8 NFATC2IP RABEP2 SH2B1 MIR4721 EIF3C TUFM SULT1A1 SPNS1 ATP2A1-AS1 LAT MIR4517 ATP2A1 NPIPB9 ATXN2L CD19

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