Hs01965055_cn

• Gene Symbol: LMNTD2
• Assay Reference Genome Location: Chr.11:554853 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 256329
• Gene Name: lamin tail domain containing 2
• Gene Aliases: C11orf35
• Location: Chr.11:554850-560780 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 14

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LMNTD2	NM_173573.2			NP_775844.2
	XM_011519965.2			XP_011518267.2
	XM_011519967.2			XP_011518269.2
	AI539379.1
	BC039077.1			AAH39077.1

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Within Exon 18

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	NM_198075.3	14	2711	NP_932341.1
	XM_005252775.2	14	3535	XP_005252832.1
	XM_005252776.2	13	3358	XP_005252833.1
	XM_006718132.2	14	3610	XP_006718195.1
	XM_006718133.2	13	2418	XP_006718196.1
	XM_011519875.2	15	2950	XP_011518177.1
	XM_011519876.1	15	3606	XP_011518178.1
	XM_011519877.2	14	2687	XP_011518179.1
	XM_017017167.1	15	3025	XP_016872656.1
	XM_017017168.1	15	3264	XP_016872657.1
	AK024495.1	11	4601	BAB15785.1
	AL831961.1	3	1077	CAD38603.1
	BC016439.1	12	2245
	BC035937.1	14	2697	AAH35937.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	HRAS MIR210 CDHR5 LRRC56 LOC143666 IRF7 PHRF1 LOC101059906 RASSF7 LMNTD2 MIR210HG
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	LRRC56 PKP3 IFITM2 SIGIRR PHRF1 PGGHG LOC101059906 RASSF7 B4GALNT4 LMNTD2 MIR210HG ANO9 HRAS MIR210 RNH1 CDHR5 IFITM3 IFITM5 LOC143666 IRF7 IFITM1 PTDSS2
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	HRAS MIR210 CDHR5 LRRC56 LOC143666 SCT IRF7 PHRF1 LOC101059906 RASSF7 LMNTD2 MIR210HG
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	TMEM80 LOC171391 MUC5B MUC2 PKP3 SLC25A22 MUC5AC SIGIRR PHRF1 LOC101059906 CEND1 B4GALNT4 DRD4 MIR210HG CD151 MUC6 ANO9 MIR210 PDDC1 TALDO1 PIDD1 CRACR2B EPS8L2 TOLLIP PTDSS2 SNORA52 CHID1 TSPAN4 AP2A2 LRRC56 DEAF1 RPLP2 RASSF7 LMNTD2 POLR2L MIR6744 HRAS RNH1 CDHR5 LOC101927503 LOC143666 SCT IRF7 PNPLA2 PANO1
esv3625070	Chr.11:553728 - 559392 on Build GRCh38	Loss	LRRC56 LMNTD2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	TMEM80 LOC171391 MUC5B MUC2 SLC25A22 TOLLIP-AS1 MUC5AC SIGIRR PHRF1 LOC101059906 CEND1 DRD4 MIR210HG CD151 MUC6 ANO9 MIR210 PDDC1 TALDO1 PIDD1 CRACR2B EPS8L2 TOLLIP PTDSS2 SNORA52 CHID1 TSPAN4 AP2A2 LRRC56 DEAF1 RPLP2 RASSF7 LMNTD2 POLR2L MIR6744 HRAS RNH1 CDHR5 LOC101927503 LOC143666 SCT IRF7 PNPLA2 PANO1
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	LRRC56 DEAF1 PHRF1 RASSF7 LMNTD2 DRD4 MIR210HG HRAS MIR210 CDHR5 LOC143666 SCT IRF7
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	TMEM80 LOC171391 PKP3 SLC25A22 SIGIRR PHRF1 LOC101059906 CEND1 B4GALNT4 DRD4 MIR210HG CD151 ANO9 MIR210 PDDC1 TALDO1 PIDD1 CRACR2B EPS8L2 PTDSS2 SNORA52 CHID1 TSPAN4 AP2A2 LRRC56 DEAF1 RPLP2 RASSF7 LMNTD2 POLR2L HRAS RNH1 CDHR5 LOC143666 SCT IRF7 PNPLA2 PANO1
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LRRC56 DEAF1 PHRF1 LOC101059906 RASSF7 LMNTD2 DRD4 MIR210HG HRAS MIR210 RNH1 CDHR5 LOC143666 SCT IRF7 PTDSS2
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	TMEM80 LOC171391 SLC25A22 PHRF1 LOC101059906 CEND1 DRD4 MIR210HG CD151 MIR210 PDDC1 TALDO1 PIDD1 CRACR2B EPS8L2 PTDSS2 SNORA52 CHID1 TSPAN4 LRRC56 DEAF1 RPLP2 RASSF7 LMNTD2 POLR2L HRAS RNH1 CDHR5 LOC143666 SCT IRF7 PNPLA2 PANO1
nsv469924	Chr.11:549119 - 609887 on Build GRCh38	Gain	MIR210 LRRC56 LOC143666 PHRF1 RASSF7 LMNTD2 MIR210HG

More Information

• Set Membership: Intragenic, Exonic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

positive regulation of mRNA splicing, via spliceosome