Hs01967214_cn

• Gene Symbol: NAGPA
• Assay Reference Genome Location: Chr.16:5033878 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 51172
• Gene Name: N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase
• Gene Aliases: APAA, UCE
• Location: Chr.16:5024844-5033941 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NAGPA	NM_016256.3	1	64	NP_057340.2
	XM_011522517.2	1	64	XP_011520819.1
	AF187072.1			AAF08273.1
	AK025570.1	1	63
	AK026122.1
	AK127952.1	1	58
	AK302916.1	1	64
	AK314320.1	1	58
	BC012194.1			AAH12194.1
	DA879815.1	1	64

Target Gene Details

• Entrez Gene ID: 100507589
• Gene Name: NAGPA antisense RNA 1
• Gene Aliases: -
• Location: Chr.16:5033702-5042971 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NAGPA-AS1	NR_038913.1	1	177
	AK055222.1	1	177

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1722	Chr.16:5031097 - 5075947 on Build GRCh38	Deletion	NAGPA C16orf89 ALG1 NAGPA-AS1
nsv1042612	Chr.16:4965694 - 5150514 on Build GRCh38	Loss	NAGPA C16orf89 ALG1 EEF2KMT SEC14L5 NAGPA-AS1
esv3892762	Chr.16:4967386 - 5060625 on Build GRCh38	Gain	NAGPA C16orf89 SEC14L5 NAGPA-AS1
nsv428318	Chr.16:5011594 - 5374828 on Build GRCh38	Gain	NAGPA C16orf89 ALG1 EEF2KMT SEC14L5 NAGPA-AS1 RBFOX1
esv25186	Chr.16:4858500 - 5142800 on Build GRCh38	Gain	NAGPA C16orf89 ALG1 PPL UBN1 EEF2KMT SEC14L5 NAGPA-AS1
esv3637713	Chr.16:4957958 - 5307305 on Build GRCh38	Gain	NAGPA C16orf89 ALG1 EEF2KMT SEC14L5 NAGPA-AS1 RBFOX1
esv3637714	Chr.16:4958035 - 5079276 on Build GRCh38	Gain	NAGPA C16orf89 ALG1 SEC14L5 NAGPA-AS1
esv2422516	Chr.16:4775920 - 5160979 on Build GRCh38	Deletion	NAGPA C16orf89 SMIM22 ALG1 PPL UBN1 ROGDI EEF2KMT SEPT12 SEC14L5 GLYR1 NAGPA-AS1
nsv1046986	Chr.16:4049000 - 5555721 on Build GRCh38	Gain	NMRAL1 PAM16 UBN1 ROGDI EEF2KMT SEPT12 CDIP1 NAGPA-AS1 RBFOX1 C16orf89 GLIS2-AS1 PPL LOC105371063 CORO7 C16orf71 SEC14L5 CORO7-PAM16 SMIM22 ZNF500 C16orf96 UBALD1 GLYR1 ANKS3 MGRN1 LINC01569 DNAJA3 NAGPA TFAP4 ALG1 SRL ADCY9 VASN NUDT16L1 GLIS2 HMOX2 MIR6769A
esv34300	Chr.16:5005938 - 5322534 on Build GRCh38	Gain	NAGPA C16orf89 ALG1 EEF2KMT SEC14L5 NAGPA-AS1 RBFOX1
nsv1038475	Chr.16:5004985 - 5310633 on Build GRCh38	Gain	NAGPA C16orf89 ALG1 EEF2KMT SEC14L5 NAGPA-AS1 RBFOX1
esv2760069	Chr.16:4922849 - 5374828 on Build GRCh38	Gain+Loss	NAGPA C16orf89 ALG1 PPL EEF2KMT SEC14L5 NAGPA-AS1 RBFOX1
nsv571303	Chr.16:4960912 - 5284683 on Build GRCh38	Loss	NAGPA C16orf89 ALG1 EEF2KMT SEC14L5 NAGPA-AS1 RBFOX1
nsv817715	Chr.16:5006294 - 5309352 on Build GRCh38	Gain	NAGPA C16orf89 ALG1 EEF2KMT SEC14L5 NAGPA-AS1 RBFOX1
nsv1039432	Chr.16:5013335 - 5074451 on Build GRCh38	Loss	NAGPA C16orf89 ALG1 SEC14L5 NAGPA-AS1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

carbohydrate metabolic process
cellular protein modification process
protein glycosylation
protein targeting to lysosome
lysosome organization

Function(s)

N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity
protein binding