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See other PRPF31 CNV Assays ›
Gene Symbol
PRPF31
Assay Reference Genome
Location

Chr.19:54115676 on build GRCh38
Cytoband
19q13.42
Assay ID Hs01993463_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 26121

Gene Name:

 pre-mRNA processing factor 31

Gene Aliases:

 NY-BR-99, PRP31, RP11, SNRNP61

Location:

 Chr.19:54115410-54131719 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PRPF31 NM_015629.3 1 267 NP_056444.3
XM_006723137.3 1 147 XP_006723200.1
AY040822.1 1 228 AAK77986.1
BC117389.1 1 191
CN306666.1 1 267

Target Gene Details

Entrez Gene ID:

 29844

Gene Name:

 TCF3 fusion partner

Gene Aliases:

 FB1, INO80F, amida

Location:

 Chr.19:54107013-54115675 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TFPT NM_013342.3 NP_037474.1
AF052052.1 AAD45182.1
AK310627.1
AK310647.1
BI820344.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv510773 Chr.19:54017180 - 54132236 on Build GRCh38 Deletion VSTM1 OSCAR NDUFA3 PRPF31 TFPT TARM1
nsv515623 Chr.19:54102901 - 54179150 on Build GRCh38 Loss MBOAT7 LENG1 TMC4 NDUFA3 PRPF31 TFPT CNOT3
nsv953613 Chr.19:54097214 - 54198733 on Build GRCh38 Deletion OSCAR MBOAT7 LENG1 TSEN34 TMC4 NDUFA3 PRPF31 TFPT CNOT3
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion MIR524 MIR517B MIR519B MIR516A2 VN1R2 PRPF31 MIR517A VN1R4 ZNF677 MIR520A MIR516B2 FAM90A27P MIR520F LILRB5 MIR527 MIR498 ZNF845 TFPT MIR519C MIR520D MIR1323 VSTM1 MIR371B MIR526A2 MIR515-1 LILRB2 NLRP12 MIR521-1 MIR526A1 MYADM LOC284379 ZNF818P MIR372 MBOAT7 DPRX ZNF813 BIRC8 MIR518C RPS9 ZNF665 MIR520C MIR516A1 MIR525 MIR518A1 MIR523 TSEN34 MIR518E MIR519A2 TPM3P9 MIR519E MIR4752 PRKCG LOC105372457 MIR518D MIR517C MIR515-2 MIR371A OSCAR LILRB3 MIR519D MIR520H MIR519A1 ZNF525 CACNG6 LILRA5 MIR373 ZNF761 LENG1 MIR518A2 CACNG7 LILRA6 MIR520E MIR522 MIR1283-2 ZNF765 ZNF331 CNOT3 MIR512-2 MIR518F MIR512-1 MIR518B MIR1283-1 CACNG8 MIR935 TMC4 NDUFA3 MIR520G MIR526B MIR516B1 MIR521-2 TARM1 MIR520B
nsv470157 Chr.19:54063999 - 54127773 on Build GRCh38 Loss OSCAR NDUFA3 PRPF31 TFPT TARM1
nsv833877 Chr.19:53951529 - 54117323 on Build GRCh38 Loss VSTM1 OSCAR CACNG8 MIR935 NDUFA3 PRPF31 CACNG6 TFPT TARM1

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