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See other PRPF31 CNV Assays ›
Gene Symbol
PRPF31
Assay Reference Genome
Location

Chr.19:54115676 on build GRCh38
Cytoband
19q13.42
Assay ID Hs01993463_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 26121

Gene Name:

 pre-mRNA processing factor 31

Gene Aliases:

 NY-BR-99, PRP31, RP11, SNRNP61

Location:

 Chr.19:54115410-54131719 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PRPF31 NM_015629.3 1 267 NP_056444.3
XM_006723137.3 1 147 XP_006723200.1
AY040822.1 1 228 AAK77986.1
BC117389.1 1 191
CN306666.1 1 267

Target Gene Details

Entrez Gene ID:

 29844

Gene Name:

 TCF3 fusion partner

Gene Aliases:

 FB1, INO80F, amida

Location:

 Chr.19:54107013-54115675 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TFPT NM_013342.3 NP_037474.1
AF052052.1 AAD45182.1
AK310627.1
AK310647.1
BI820344.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv510773 Chr.19:54017180 - 54132236 on Build GRCh38 Deletion VSTM1 TFPT OSCAR NDUFA3 TARM1 PRPF31
nsv515623 Chr.19:54102901 - 54179150 on Build GRCh38 Loss LENG1 CNOT3 TFPT TMC4 NDUFA3 MBOAT7 PRPF31
nsv953613 Chr.19:54097214 - 54198733 on Build GRCh38 Deletion LENG1 CNOT3 TFPT OSCAR TMC4 NDUFA3 MBOAT7 TSEN34 PRPF31
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion MIR4752 LILRB3 MIR518D MIR517A ZNF761 MIR526A2 MIR520E MIR519D MIR518B VN1R4 LOC105372457 MIR1283-1 LILRB5 CNOT3 NLRP12 ZNF818P ZNF813 RPS9 MIR518A2 MIR526A1 TSEN34 PRKCG MIR520H MIR517B MIR516A2 MIR518E TPM3P9 MIR516B1 MIR520F TARM1 MIR371B MIR521-2 MIR519C CACNG8 ZNF331 ZNF845 VSTM1 MIR512-1 LOC284379 MIR517C MIR372 MIR519E FAM90A27P MIR527 MIR519A2 MIR523 MIR522 MIR518A1 MIR498 MIR521-1 MIR519B LILRB2 TFPT OSCAR BIRC8 TMC4 MIR520G LILRA6 MIR515-2 PRPF31 LENG1 MIR516A1 MIR520B MBOAT7 MIR518F VN1R2 MIR519A1 MIR516B2 MIR935 MIR512-2 CACNG7 ZNF765 MIR371A NDUFA3 MIR520A LILRA5 MIR520D MIR525 ZNF525 MIR373 CACNG6 ZNF677 ZNF665 MIR515-1 MIR1323 MYADM MIR526B MIR520C MIR518C MIR1283-2 MIR524 DPRX
nsv470157 Chr.19:54063999 - 54127773 on Build GRCh38 Loss TFPT OSCAR NDUFA3 TARM1 PRPF31
nsv833877 Chr.19:53951529 - 54117323 on Build GRCh38 Loss VSTM1 MIR935 TFPT OSCAR NDUFA3 TARM1 CACNG8 CACNG6 PRPF31

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