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Gene Symbol
GPAA1
Assay Reference Genome
Location

Chr.8:144084426 on build GRCh38
Cytoband
8q24.3
Assay ID Hs02000103_cn
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Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 8733

Gene Name:

 glycosylphosphatidylinositol anchor attachment 1

Gene Aliases:

 GAA1, hGAA1

Location:

 Chr.8:144082621-144086216 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 6 - Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
GPAA1 NM_003801.3 NP_003792.1
AB002135.1 BAA82588.1
AB006969.1 BAA24035.1
AK312759.1
AL157437.1 CAB75660.2
BC003171.1 AAH03171.1
BC004129.2 AAH04129.1
BC006383.2 AAH06383.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759651 Chr.8:144076281 - 144230741 on Build GRCh38 Gain GPAA1 MAF1 MROH1 MIR6847 EXOSC4 WDR97 CYC1 SHARPIN HGH1
nsv470249 Chr.8:143889098 - 144519234 on Build GRCh38 Loss MIR6849 GPAA1 LRRC14 OPLAH ADCK5 GRINA GPT HSF1 PARP10 TMEM249 KIFC2 LOC101928902 DGAT1 CPSF1 MIR6893 MAF1 PPP1R16A MFSD3 SMPD5 MIR6848 SLC52A2 TONSL-AS1 MIR1234 SCRT1 HGH1 MIR939 MIR7112 SLC39A4 MROH1 PLEC EXOSC4 WDR97 CYC1 RECQL4 SPATC1 LOC101928953 CYHR1 BOP1 FBXL6 MIR6847 FOXH1 SCX TONSL MIR661 MIR6846 VPS28 SHARPIN
nsv612914 Chr.8:143972494 - 144120626 on Build GRCh38 Loss GPAA1 OPLAH GRINA PARP10 PLEC EXOSC4 WDR97 CYC1 SPATC1 MAF1 SMPD5 MIR6847 MIR6846 SHARPIN
nsv950015 Chr.8:143866633 - 144125597 on Build GRCh38 Deletion GPAA1 OPLAH GRINA PARP10 EPPK1 PLEC EXOSC4 WDR97 CYC1 SPATC1 MAF1 SMPD5 MIR6847 MIR661 MIR6846 SHARPIN
nsv1025071 Chr.8:144044224 - 144300847 on Build GRCh38 Gain GPAA1 OPLAH MIR7112 HSF1 MROH1 EXOSC4 WDR97 CYC1 SPATC1 BOP1 MAF1 SMPD5 MIR6847 SCX MIR6846 SHARPIN HGH1
esv29971 Chr.8:144068526 - 144172197 on Build GRCh38 Loss GPAA1 MAF1 MROH1 MIR6847 EXOSC4 WDR97 CYC1 SHARPIN HGH1
nsv466014 Chr.8:144007080 - 144224185 on Build GRCh38 Loss GPAA1 OPLAH MROH1 EXOSC4 WDR97 CYC1 SPATC1 MAF1 SMPD5 MIR6847 MIR6846 SHARPIN HGH1
nsv515809 Chr.8:143904439 - 144519234 on Build GRCh38 Gain+Loss MIR6849 GPAA1 LRRC14 OPLAH ADCK5 GRINA GPT HSF1 PARP10 TMEM249 KIFC2 LOC101928902 DGAT1 CPSF1 MIR6893 MAF1 PPP1R16A MFSD3 SMPD5 MIR6848 SLC52A2 TONSL-AS1 MIR1234 SCRT1 HGH1 MIR939 MIR7112 SLC39A4 MROH1 PLEC EXOSC4 WDR97 CYC1 RECQL4 SPATC1 LOC101928953 CYHR1 BOP1 FBXL6 MIR6847 FOXH1 SCX TONSL MIR661 MIR6846 VPS28 SHARPIN
nsv6447 Chr.8:144064665 - 144087389 on Build GRCh38 Insertion GPAA1 MIR6847 EXOSC4
dgv906n27 Chr.8:143845100 - 144161320 on Build GRCh38 Loss GPAA1 OPLAH GRINA PARP10 EPPK1 MROH1 PLEC EXOSC4 WDR97 CYC1 SPATC1 MAF1 SMPD5 MIR6847 MIR661 MIR6846 SHARPIN HGH1
dgv12433n54 Chr.8:143902404 - 144120626 on Build GRCh38 Gain GPAA1 OPLAH GRINA PARP10 PLEC EXOSC4 WDR97 CYC1 SPATC1 MAF1 SMPD5 MIR6847 MIR661 MIR6846 SHARPIN
nsv470250 Chr.8:143917934 - 144097007 on Build GRCh38 Gain GPAA1 OPLAH GRINA SMPD5 PARP10 MIR6847 PLEC EXOSC4 CYC1 MIR661 MIR6846 SPATC1
nsv428208 Chr.8:144041826 - 144722291 on Build GRCh38 Gain MIR6849 GPAA1 ZNF251 LRRC14 OPLAH ADCK5 GPT ARHGAP39 HSF1 TMEM249 KIFC2 LOC101928902 DGAT1 C8orf82 CPSF1 MIR6893 MAF1 PPP1R16A MFSD3 SMPD5 MIR6848 SLC52A2 TONSL-AS1 MIR1234 SCRT1 HGH1 MIR939 MIR7112 SLC39A4 LRRC24 MROH1 EXOSC4 WDR97 CYC1 RECQL4 SPATC1 LOC101928953 CYHR1 BOP1 FBXL6 MIR6847 FOXH1 SCX TONSL MIR6846 VPS28 SHARPIN
nsv612907 Chr.8:143917935 - 144097007 on Build GRCh38 Gain+Loss GPAA1 OPLAH GRINA SMPD5 PARP10 MIR6847 PLEC EXOSC4 CYC1 MIR661 MIR6846 SPATC1

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More Information


Additional Information:

For this assay, SNP(s) [rs112703109] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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