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See other RPUSD1 CNV Assays ›
Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:787383 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02012804_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 3 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 NP_001311015.1
NM_001324410.1 NP_001311339.1
NM_001324411.1 NP_001311340.1
NM_001324412.1 NP_001311341.1
NM_001324413.1 NP_001311342.1
NM_001324414.1 NP_001311343.1
NM_001324415.1 NP_001311344.1
NM_058192.2 NP_478072.1
AL514840.3
AL520203.3
BC011783.2 AAH11783.1
BG686882.1
BM763460.1
BX358716.2
CN311777.1
CN311779.1
CX786721.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain RPUSD1 PRR25 MIR662 GNG13 CHTF18 MSLN
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain RPUSD1 PRR25 MIR662 GNG13 CHTF18 MSLN
nsv571040 Chr.16:774098 - 797597 on Build GRCh38 Loss RPUSD1 CHTF18
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication CLCN7 ZNF598 RNPS1 C16orf91 LOC106660606 MRPS34 HBQ1 SNORD60 C1QTNF8 GNG13 SNORA10 NTN3 CHTF18 CAPN15 MIR3677 METTL26 LINC00235 CCDC78 MIR6511B1 LOC729652 RNF151 NPW FAHD1 FAM234A ABCA3 NUBP2 PRR25 NTHL1 NHLRC4 RHBDF1 TMEM8A CASKIN1 NDUFB10 LOC107984876 RAB26 GNPTG HN1L HBZ LOC101929280 MLST8 HS3ST6 ERVK13-1 RHOT2 TPSG1 TSC2 TSR3 MCRIP2 LMF1-AS1 MIR3176 KCTD5 TBL3 CEMP1 PDPK1 SNORA78 TPSAB1 EME2 CRAMP1 RGS11 PGP DDX11L10 LOC105371049 PRSS29P RPL23AP5 AMDHD2 PIGQ NME4 MEIOB MIR662 SSTR5-AS1 C16orf59 POLR3K LMF1 ABCA17P SSTR5 MIR3180-5 TPSB2 MRPL28 PKD1 NME3 BAIAP3 MIR3177 BRICD5 SLC9A3R2 LUC7L LOC652276 HAGHL TPSD1 SPSB3 SOX8 STUB1 MIR4516 DNASE1L2 NOXO1 RAB11FIP3 HBA1 MSLN LOC100134368 RPUSD1 WDR24 IFT140 WFIKKN1 TRAF7 ATP6V0C LINC00254 IGFALS TBC1D24 TMEM204 CCDC154 UBE2I E4F1 PRSS27 LOC105371038 SYNGR3 LOC107987233 MPG WASIR2 MIR5587 HBM LOC105371047 TELO2 PDIA2 RPS2 METRN SNORA64 LOC105371184 LOC105371046 UNKL MIR3178 RHBDL1 HBA2 MIR6767 FAM173A CACNA1H MIR6768 WDR90 PRR35 MIR940 MSRB1 HAGH RPL3L FLJ42627 NARFL SNHG19 LOC105371045 SNHG9 FBXL16 JMJD8 MIR1225 ARHGDIG DECR2 CCNF MIR6859-4 LOC100287175 PTX4 NPRL3 ECI1 GFER MIR4717 RAB40C SNRNP25 MAPK8IP3 AXIN1
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss STUB1 LOC105371038 RHBDL1 MCRIP2 MIR662 FBXL16 JMJD8 FAM173A GNG13 CHTF18 MSLN WDR90 RPUSD1 WDR24 LOC100287175 CCDC78 METRN NARFL LOC105371184 RHOT2 HAGHL
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss STUB1 RHBDL1 MCRIP2 MIR3176 RAB11FIP3 FAM173A GNG13 CHTF18 MSLN WDR90 PRR35 CAPN15 METTL26 RPUSD1 WDR24 LINC00235 WFIKKN1 CCDC78 NARFL PIGQ LOC105371038 PRR25 LOC107987233 MIR662 FBXL16 JMJD8 NHLRC4 MIR5587 LOC100287175 METRN LOC101929280 RAB40C LOC105371184 RHOT2 HAGHL
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss STUB1 RHBDL1 MCRIP2 MIR3176 RAB11FIP3 FAM173A GNG13 CHTF18 MSLN WDR90 PRR35 CAPN15 METTL26 RPUSD1 WDR24 LINC00235 WFIKKN1 CCDC78 NARFL PIGQ LOC105371038 PRR25 LOC107987233 MIR662 FBXL16 JMJD8 NHLRC4 MIR5587 LOC100287175 METRN LOC101929280 RAB40C LOC105371184 RHOT2 HAGHL
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion SOX8 STUB1 RHBDL1 MCRIP2 LMF1-AS1 MIR3176 RAB11FIP3 C1QTNF8 FAM173A GNG13 CHTF18 MSLN WDR90 PRR35 CAPN15 METTL26 RPUSD1 WDR24 LINC00235 WFIKKN1 CCDC78 NARFL PIGQ LOC105371038 PRR25 LOC107987233 MIR662 SSTR5-AS1 FBXL16 JMJD8 LMF1 NHLRC4 MIR5587 SSTR5 LOC107984876 LOC100287175 METRN LOC101929280 RAB40C LOC105371184 RHOT2 HAGHL
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss RPUSD1 PRR25 GNG13 CHTF18
dgv4827n54 Chr.16:760039 - 810673 on Build GRCh38 Loss RPUSD1 PRR25 MIR662 GNG13 CHTF18 MSLN
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication STUB1 RHBDL1 MCRIP2 FAM173A GNG13 CHTF18 MSLN WDR90 METTL26 RPUSD1 WDR24 WFIKKN1 CCDC78 NARFL PIGQ LOC105371038 MIR662 FBXL16 JMJD8 LOC100287175 METRN LOC101929280 RAB40C LOC105371184 RHOT2 HAGHL
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication STUB1 RHBDL1 MCRIP2 MIR3176 RAB11FIP3 FAM173A GNG13 CHTF18 MSLN WDR90 PRR35 CAPN15 METTL26 RPUSD1 WDR24 LINC00235 WFIKKN1 CCDC78 NARFL PIGQ LOC105371038 PRR25 LOC107987233 MIR662 FBXL16 JMJD8 NHLRC4 MIR5587 LOC100287175 METRN LOC101929280 RAB40C LOC105371184 RHOT2 HAGHL

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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