Genomic Map
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Target Gene Details
Entrez Gene ID: | 6472 |
Gene Name: | serine hydroxymethyltransferase 2 |
Gene Aliases: |
GLYA, HEL-S-51e, SHMT |
Location: |
Chr.12:57229573-57234935 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SHMT2 | NM_001166356.1 | 12 | 1828 | NP_001159828.1 |
| NM_001166357.1 | 12 | 1920 | NP_001159829.1 | |
| NM_001166358.1 | 12 | 1819 | NP_001159830.1 | |
| NM_001166359.1 | 12 | 1712 | NP_001159831.1 | |
| NM_005412.5 | 12 | 1858 | NP_005403.2 | |
| NR_029415.1 | 11 | 1660 | ||
| NR_029416.1 | 11 | 1739 | ||
| NR_029417.1 | 11 | 1778 | ||
| NR_048562.1 | 11 | 1868 | ||
| XM_011538675.2 | 12 | 1798 | XP_011536977.1 | |
| XM_011538676.2 | 12 | 1789 | XP_011536978.1 | |
| XM_011538677.2 | 11 | 1699 | XP_011536979.1 | |
| XM_011538678.2 | 11 | 1681 | XP_011536980.1 | |
| AK055053.1 | 6 | 3184 | ||
| AK223555.1 | 12 | 1720 | BAD97275.1 | |
| AK295941.1 | 11 | 1714 | ||
| AK296183.1 | ||||
| AK297173.1 | 11 | 1620 | ||
| AK301339.1 | ||||
| AK301443.1 | ||||
| AK303827.1 | 11 | 1534 | ||
| AK315916.1 | 12 | 1912 | ||
| BC011911.2 | 12 | 1662 | AAH11911.1 | |
| BC013677.2 | 12 | 1722 | AAH13677.1 | |
| BC032584.1 | 12 | 1701 | AAH32584.1 | |
| BC044211.1 | 12 | 1698 | AAH44211.1 | |
| BC091501.1 | 11 | 1582 | AAH91501.1 | |
| BX647711.1 | 12 | 1779 | CAI46021.1 | |
| BX648847.1 | 10 | 1260 | ||
| EU668344.1 | 12 | 1662 | ||
| L11932.1 | 11 | 1563 | AAA63258.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv482992 | Chr.12:56206217 - 57706217 on Build GRCh38 | Gain+Loss |
 PIP4K2C
MIR616
TAC3
LRP1
MIR1228
RDH16
DTX3
ARHGEF25
R3HDM2
MIR6758
NEMP1
HSD17B6
INHBC
TIMELESS
STAT2
NAB2
SNORD59A
GLI1
OS9
GLS2
PTGES3
ATP5B
IL23A
CNPY2
HBCBP
CS
B4GALNT1
STAT6
NDUFA4L2
STAC3
RBMS2
SNORD59B
BAZ2A
SLC26A10
ANKRD52
SHMT2
NABP2
RNF41
ZBTB39
LOC101927583
ARHGAP9
PAN2
SLC39A5
MYO1A
DCTN2
NACA
KIF5A
SNORA105C
GPR182
LRP1-AS
INHBE
MBD6
NXPH4
DDIT3
APOF
COQ10A
PRIM1
MARS
SPRYD4
SDR9C7
MIP
|
| nsv519293 | Chr.12:57189889 - 57243810 on Build GRCh38 | Loss |
SHMT2
MIR1228
NDUFA4L2
STAC3
NXPH4
LRP1
|
| nsv952189 | Chr.12:57127118 - 57245617 on Build GRCh38 | Deletion |
SHMT2
MIR1228
NDUFA4L2
STAC3
LRP1-AS
NXPH4
LRP1
|
| dgv96n21 | Chr.12:57139199 - 57243810 on Build GRCh38 | Loss |
SHMT2
MIR1228
NDUFA4L2
STAC3
LRP1-AS
NXPH4
LRP1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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