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See other CPSF3L CNV Assays ›
Gene Symbol
CPSF3L
Assay Reference Genome
Location

Chr.1:1314297 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02033887_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 54973

Gene Name:

 cleavage and polyadenylation specific factor 3-like

Gene Aliases:

 CPSF73L, INT11, INTS11, RC-68, RC68

Location:

 Chr.1:1311585-1324687 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 10 - Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CPSF3L NM_001256456.1 NP_001243385.1
NM_001256460.1 NP_001243389.1
NM_001256462.1 NP_001243391.1
NM_001256463.1 NP_001243392.1
NM_017871.5 NP_060341.2
XM_011541647.1 XP_011539949.1
XM_011541648.1 XP_011539950.1
XM_011541650.1 XP_011539952.1
XM_017001557.1 XP_016857046.1
XM_017001558.1 XP_016857047.1
AK021939.1 BAB13943.1
AK023356.1 BAB14541.1
AK056652.1
AK058018.1
AK092190.1
AK123641.1 1 874
AK291387.1
AK297350.1
AL136813.1 CAB66747.1
BC000675.2 AAH00675.2
BC007978.2 AAH07978.1
BC008041.2 AAH08041.1
BC013904.2 AAH13904.2
BC020199.1 AAH20199.1
CR533557.1 CAG38588.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss TMEM88B OR4F5 TMEM240 TTLL10-AS1 MMP23B LOC100288069 FAAP20 ATAD3C LOC284600 FAM132A ANKRD65 UBE2J2 MIR6726 SLC35E2 RNF223 PUSL1 LOC105378949 LOC100287934 MIR6808 LOC100288175 TNFRSF4 CFAP74 PERM1 B3GALT6 GABRD MIR429 FAM138A CDK11B WASH7P LOC148413 LOC100133331 NOC2L CALML6 MIR6859-2 TNFRSF18 ATAD3A LOC100130417 LOC105378592 C1orf159 DDX11L1 MIB2 LOC107985728 LOC100129534 MXRA8 LOC107984841 FAM41C TTLL10 MIR6723 OR4F29 SKI LOC100134822 ISG15 SDF4 LOC107985729 CDK11A LINC00115 DVL1 OR4F16 SAMD11 MIR1302-2 SSU72 FNDC10 LINC01342 CCNL2 TMEM52 MTND1P23 AURKAIP1 CPTP ATAD3B MIR200A LOC100132287 HES4 ACAP3 TAS1R3 LOC105378589 LOC105378591 MRPL20 VWA1 LOC105378947 MMP23A LOC729737 LOC102724312 AGRN PLEKHN1 LOC105378948 NADK MIR200B LOC101928626 MIR6727 SLC35E2B CPSF3L MIR6859-1 LOC102725121 FAM87B KLHL17 LINC01128 LOC100506504 MORN1 MTND2P28 GNB1 SCNN1D PRKCZ
nsv544971 Chr.1:1294063 - 1351426 on Build GRCh38 Loss MIR6726 MIR6727 ACAP3 MIR6808 CPSF3L TAS1R3 CPTP PUSL1 DVL1
nsv544969 Chr.1:1290683 - 1374597 on Build GRCh38 Loss MIR6726 MIR6727 ACAP3 MIR6808 CPSF3L MXRA8 AURKAIP1 TAS1R3 SCNN1D CPTP PUSL1 DVL1
dgv7n100 Chr.1:1306835 - 1379057 on Build GRCh38 Loss MIR6727 ACAP3 MIR6808 CPSF3L MXRA8 AURKAIP1 TAS1R3 CPTP PUSL1 DVL1
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss B3GALT6 TTLL10 ACAP3 TAS1R3 MIR429 TTLL10-AS1 SDF4 FAM132A MIR200B DVL1 UBE2J2 MIR6726 MIR6727 CPSF3L TNFRSF18 RNF223 PUSL1 C1orf159 LINC01342 MIR6808 TNFRSF4 MXRA8 AURKAIP1 SCNN1D CPTP MIR200A
dgv6n100 Chr.1:1301750 - 1362354 on Build GRCh38 Gain+Loss MIR6727 ACAP3 MIR6808 CPSF3L MXRA8 TAS1R3 CPTP PUSL1 DVL1
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication B3GALT6 TTLL10 ACAP3 TAS1R3 MIR429 TTLL10-AS1 SDF4 AGRN FAM132A LOC105378948 MIR200B UBE2J2 MIR6726 MIR6727 CPSF3L TNFRSF18 RNF223 PUSL1 C1orf159 LINC01342 LOC100288175 TNFRSF4 SCNN1D CPTP MIR200A
nsv1160788 Chr.1:1282706 - 1376336 on Build GRCh38 Deletion MIR6726 MIR6727 ACAP3 MIR6808 CPSF3L MXRA8 AURKAIP1 TAS1R3 SCNN1D CPTP PUSL1 DVL1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TTLL10 TMEM88B TMEM240 TTLL10-AS1 MMP23B LOC100288069 ISG15 ATAD3C LOC284600 SDF4 LOC107985729 CDK11A LINC00115 FAM132A DVL1 ANKRD65 UBE2J2 MIR6726 SAMD11 SLC35E2 RNF223 PUSL1 SSU72 FNDC10 LINC01342 CCNL2 LOC100287934 MIR6808 LOC100288175 TNFRSF4 AURKAIP1 CPTP ATAD3B MIR200A PERM1 B3GALT6 HES4 ACAP3 TAS1R3 MIR429 MRPL20 VWA1 MMP23A CDK11B LOC102724312 AGRN PLEKHN1 LOC105378948 LOC148413 NADK MIR200B MIR6727 SLC35E2B NOC2L CPSF3L FAM87B TNFRSF18 ATAD3A KLHL17 LINC01128 LOC100130417 C1orf159 MIB2 LOC107985728 MXRA8 SCNN1D FAM41C
esv3890636 Chr.1:1304555 - 1353203 on Build GRCh38 Loss MIR6727 ACAP3 MIR6808 CPSF3L MXRA8 TAS1R3 CPTP PUSL1 DVL1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion B3GALT6 TTLL10 TMEM88B ACAP3 TAS1R3 MIR429 MRPL20 TMEM240 VWA1 TTLL10-AS1 MMP23B CDK11B ATAD3C LOC102724312 SDF4 LOC107985729 FAM132A LOC148413 MIR200B DVL1 ANKRD65 UBE2J2 MIR6726 MIR6727 CPSF3L TNFRSF18 ATAD3A PUSL1 SSU72 FNDC10 C1orf159 MIB2 LINC01342 CCNL2 MIR6808 TNFRSF4 MXRA8 AURKAIP1 SCNN1D CPTP ATAD3B MIR200A
nsv1000169 Chr.1:1281678 - 1362354 on Build GRCh38 Gain MIR6726 MIR6727 ACAP3 MIR6808 CPSF3L MXRA8 TAS1R3 SCNN1D CPTP PUSL1 DVL1
esv2758912 Chr.1:1263940 - 1384492 on Build GRCh38 Loss UBE2J2 MIR6726 MIR6727 ACAP3 CPSF3L TAS1R3 PUSL1 MIR6808 MXRA8 AURKAIP1 SCNN1D CPTP DVL1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain B3GALT6 TTLL10 HES4 TMEM88B ACAP3 TAS1R3 MIR429 MRPL20 TTLL10-AS1 ISG15 LOC284600 SDF4 AGRN FAM132A PLEKHN1 LOC105378948 LOC148413 MIR200B DVL1 ANKRD65 UBE2J2 MIR6726 MIR6727 NOC2L CPSF3L SAMD11 TNFRSF18 KLHL17 RNF223 PUSL1 LOC100130417 C1orf159 LINC01342 CCNL2 MIR6808 LOC107985728 LOC100288175 TNFRSF4 MXRA8 AURKAIP1 SCNN1D CPTP MIR200A PERM1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain UBE2J2 B3GALT6 TTLL10 MIR6726 MIR6727 ACAP3 CPSF3L MIR429 TNFRSF18 PUSL1 TTLL10-AS1 TNFRSF4 SDF4 SCNN1D FAM132A MIR200A MIR200B

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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