Name: [Hs02046198_cn] [ATP2A3]
Creator: Thermo Fisher Scientific
Keywords: [ATP2A3] Assay, [ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	489
Gene Name:	ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3
Gene Aliases:	SERCA3
Location:	Chr.17:3923869-3964464 on Build GRCh38
Assay Gene Location:	Within Exon 25

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ATP2A3	NM_005173.3	21	4038	NP_005164.2
	NM_174953.2	23	4197	NP_777613.1
	NM_174954.2	23	4184	NP_777614.1
	NM_174955.2	22	4126	NP_777615.1
	NM_174956.2	22	4139	NP_777616.1
	NM_174957.2	21	4035	NP_777617.1
	NM_174958.2	23	3545	NP_777618.1
	XM_011523885.1	22	4123	XP_011522187.1
	XM_011523888.2	22	4136	XP_011522190.1
	AF068221.1	11	1773	AAC24526.1
	BC035729.1			AAH35729.1
	Z69881.1	21	3871	CAA93737.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1065489	Chr.17:2631416 - 3948349 on Build GRCh38	Gain	OR1G1 OR1A2 ASPA LOC105371592 SPATA22 OR3A2 RAP1GAP2 TRPV3 OR3A3 OR1D4 OR1D2 GSG2 OR3A4P CCDC92B P2RX1 LOC101927911 ATP2A3 TAX1BP3 CLUH SHPK MIR1253 P2RX5-TAX1BP3 MIR6776 PAFAH1B1 ITGAE OR1D5 OR1E1 CAMKK1 CTNS OR3A1 LOC105371591 TRPV1 NCBP3 EMC6 P2RX5 OR1E2 OR1A1
nsv517834	Chr.17:3904738 - 3976854 on Build GRCh38	Loss	P2RX1 ATP2A3
nsv833343	Chr.17:3822173 - 3980223 on Build GRCh38	Loss	NCBP3 P2RX1 ATP2A3 CAMKK1
esv2761940	Chr.17:3767589 - 3997617 on Build GRCh38	Gain	NCBP3 ITGAE P2RX1 ATP2A3 CAMKK1
nsv952108	Chr.17:3917607 - 3956106 on Build GRCh38	Deletion	ATP2A3
nsv524296	Chr.17:3890009 - 3935332 on Build GRCh38	Loss	P2RX1 ATP2A3 CAMKK1
nsv526126	Chr.17:3860639 - 3993513 on Build GRCh38	Loss	P2RX1 ATP2A3 CAMKK1