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See other RPUSD1 CNV Assays ›
Gene Symbol
RPUSD1
Assay Reference Genome
Location

Chr.16:785903 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02054093_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 113000

Gene Name:

 RNA pseudouridylate synthase domain containing 1

Gene Aliases:

 C16orf40, RLUCL

Location:

 Chr.16:784974-788383 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RPUSD1 NM_001324086.1 6 1130 NP_001311015.1
NM_001324410.1 6 1031 NP_001311339.1
NM_001324411.1 5 1018 NP_001311340.1
NM_001324412.1 5 932 NP_001311341.1
NM_001324413.1 6 1022 NP_001311342.1
NM_001324414.1 6 1078 NP_001311343.1
NM_001324415.1 6 1131 NP_001311344.1
NM_058192.2 6 1121 NP_478072.1
AL520203.3
BC011783.2 5 986 AAH11783.1
BC012951.2 2 621 AAH12951.2
BX358716.2

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4828n54 Chr.16:760143 - 828324 on Build GRCh38 Gain MSLN PRR25 RPUSD1 GNG13 CHTF18 MIR662
esv3637582 Chr.16:751057 - 851536 on Build GRCh38 Gain MSLN PRR25 RPUSD1 GNG13 CHTF18 MIR662
nsv817712 Chr.16:774098 - 810673 on Build GRCh38 Loss PRR25 RPUSD1 GNG13 CHTF18
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HBA1 SNORA10 ABCA17P FAHD1 MIR4717 GNG13 LOC729652 NHLRC4 LUC7L RNF151 LOC105371047 BAIAP3 SNRNP25 LOC100134368 LMF1-AS1 MIR6767 LOC100287175 MEIOB LOC107984876 HAGH PRR35 KCTD5 SNHG9 MIR5587 TMEM204 PRSS29P LOC652276 CRAMP1 HS3ST6 ERVK13-1 MIR1225 C16orf91 HBA2 PKD1 MRPS34 IFT140 SNORA64 CASKIN1 LOC105371045 FBXL16 FAM173A TBL3 GNPTG NME4 HN1L CCDC154 LOC105371038 LOC106660606 E4F1 DNASE1L2 RPUSD1 MAPK8IP3 SSTR5 PTX4 C1QTNF8 LOC105371184 PDIA2 RAB40C C16orf59 SNHG19 TMEM8A PRSS27 CCNF MSRB1 HBZ MIR4516 MIR940 SOX8 LINC00235 SYNGR3 CCDC78 UBE2I RHOT2 DDX11L10 MIR3677 ABCA3 HBM MIR662 MIR3176 HBQ1 CEMP1 NTN3 NUBP2 CLCN7 TPSD1 SSTR5-AS1 SNORD60 FLJ42627 RPS2 METRN MRPL28 CHTF18 TPSAB1 RHBDL1 BRICD5 AXIN1 RAB11FIP3 LOC107987233 ATP6V0C TBC1D24 MIR6768 RPL3L TELO2 POLR3K MIR3178 NTHL1 CAPN15 MIR6859-4 ARHGDIG TSC2 LOC105371046 LOC105371049 MIR3177 LMF1 MCRIP2 RNPS1 PGP METTL26 TPSG1 WDR90 PDPK1 MPG DECR2 WFIKKN1 NPRL3 NARFL WDR24 GFER CACNA1H RAB26 SPSB3 SLC9A3R2 ZNF598 PIGQ RHBDF1 HAGHL NDUFB10 RPL23AP5 STUB1 ECI1 LINC00254 TSR3 FAM234A EME2 MIR3180-5 UNKL NPW MIR6511B1 LOC101929280 MSLN TRAF7 IGFALS SNORA78 RGS11 NME3 AMDHD2 TPSB2 NOXO1 PRR25 WASIR2 JMJD8 MLST8
nsv471063 Chr.16:520623 - 852322 on Build GRCh38 Loss LOC105371038 NARFL WDR24 METRN RPUSD1 GNG13 CHTF18 RHBDL1 LOC105371184 RAB11FIP3 LOC107987233 PIGQ NHLRC4 RAB40C HAGHL STUB1 CAPN15 LOC100287175 LINC00235 PRR35 CCDC78 RHOT2 LOC101929280 MSLN MIR5587 MCRIP2 METTL26 MIR662 MIR3176 WDR90 PRR25 JMJD8 FBXL16 FAM173A WFIKKN1
nsv9321 Chr.16:638149 - 804328 on Build GRCh38 Gain+Loss LOC105371038 NARFL WDR24 METRN CCDC78 RHOT2 MSLN RPUSD1 GNG13 MCRIP2 CHTF18 RHBDL1 LOC105371184 MIR662 WDR90 HAGHL STUB1 JMJD8 FBXL16 FAM173A LOC100287175
nsv526903 Chr.16:451362 - 810673 on Build GRCh38 Loss LOC105371038 NARFL WDR24 METRN RPUSD1 GNG13 CHTF18 RHBDL1 LOC105371184 RAB11FIP3 LOC107987233 PIGQ NHLRC4 RAB40C HAGHL STUB1 CAPN15 LOC100287175 LINC00235 PRR35 CCDC78 RHOT2 LOC101929280 MSLN MIR5587 MCRIP2 METTL26 MIR662 MIR3176 WDR90 PRR25 JMJD8 FBXL16 FAM173A WFIKKN1
nsv952898 Chr.16:495001 - 1132900 on Build GRCh38 Deletion SSTR5-AS1 LOC105371038 NARFL WDR24 METRN RPUSD1 GNG13 SSTR5 CHTF18 C1QTNF8 RHBDL1 LOC105371184 RAB11FIP3 LOC107987233 PIGQ NHLRC4 RAB40C HAGHL STUB1 LMF1-AS1 CAPN15 LOC100287175 LOC107984876 SOX8 LINC00235 PRR35 CCDC78 LMF1 RHOT2 LOC101929280 MSLN MIR5587 MCRIP2 METTL26 MIR662 MIR3176 WDR90 PRR25 JMJD8 FBXL16 FAM173A WFIKKN1
nsv571042 Chr.16:785298 - 847566 on Build GRCh38 Loss PRR25 RPUSD1 GNG13 CHTF18
nsv457312 Chr.16:760039 - 797743 on Build GRCh38 Loss MSLN RPUSD1 CHTF18 MIR662
nsv1160326 Chr.16:580902 - 804689 on Build GRCh38 Duplication LOC105371038 NARFL WDR24 METRN RPUSD1 GNG13 CHTF18 RHBDL1 LOC105371184 PIGQ RAB40C HAGHL STUB1 LOC100287175 CCDC78 RHOT2 LOC101929280 MSLN MCRIP2 METTL26 MIR662 WDR90 JMJD8 FBXL16 FAM173A WFIKKN1
nsv1160325 Chr.16:506925 - 836376 on Build GRCh38 Duplication LOC105371038 NARFL WDR24 METRN RPUSD1 GNG13 CHTF18 RHBDL1 LOC105371184 RAB11FIP3 LOC107987233 PIGQ NHLRC4 RAB40C HAGHL STUB1 CAPN15 LOC100287175 LINC00235 PRR35 CCDC78 RHOT2 LOC101929280 MSLN MIR5587 MCRIP2 METTL26 MIR662 MIR3176 WDR90 PRR25 JMJD8 FBXL16 FAM173A WFIKKN1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)


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