Hs02057691_cn

• Gene Symbol: LOC101927142
• Assay Reference Genome Location: Chr.2:100974932 on build GRCh38
• Cytoband: 2q11.2

Target Gene Details

• Entrez Gene ID: 101927142
• Gene Name: uncharacterized LOC101927142
• Gene Aliases: -
• Location: Chr.2:100972648-100977161 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC101927142	NR_110213.1
	AA909092.1

Target Gene Details

• Entrez Gene ID: 4862
• Gene Name: neuronal PAS domain protein 2
• Gene Aliases: MOP4, PASD4, bHLHe9
• Location: Chr.2:100820151-100996829 on Build GRCh38
• Assay Gene Location: Overlaps Exon 15 - Intron 15

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NPAS2	NM_002518.3			NP_002509.2
	XM_005263953.2			XP_005264010.1
	XM_005263959.2			XP_005264016.1
	XM_005263960.2			XP_005264017.1
	XM_005263961.4			XP_005264018.1
	XM_011511242.2			XP_011509544.1
	XM_011511243.2			XP_011509545.1
	XM_017004214.1			XP_016859703.1
	XM_017004215.1			XP_016859704.1
	XM_017004216.1			XP_016859705.1
	XM_017004217.1			XP_016859706.1
	AK095806.1
	AK226093.1
	AK294733.1
	BC028107.1
	BC051351.1			AAH51351.2
	BC072383.1			AAH72383.1
	BM724652.1
	BX640699.1
	KJ534892.1
	U51625.1			AAC51211.1
	U77970.1			AAB47250.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv834316	Chr.2:100916586 - 101115039 on Build GRCh38	Gain	TBC1D8 LOC101927142 RPL31 NPAS2

More Information

Additional Information:

For this assay, SNP(s) [rs115907938] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
cellular response to DNA damage stimulus
central nervous system development
circadian rhythm
circadian regulation of gene expression
positive regulation of DNA repair
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
response to redox state
negative regulation of cell death
regulation of response to DNA damage stimulus

Function(s)

core promoter binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
metal ion binding
protein dimerization activity
Hsp90 protein binding