Hs02078402_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137031070 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	2	1518	NP_004470.1
	AK313124.1	2	1152
	BC074746.2	2	694	AAH74746.2
	BC086312.1	2	1518	AAH86312.1
	U08112.1	2	806	AAA56869.1
	U11282.1	2	806	AAA20468.1
	X78031.1	2	791	CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	CLIC3 MAN1B1-AS1 PRR31 ABCA2 PTGDS C9orf142 MAN1B1 C9orf139 UAP1L1 ENTPD2 FUT7 DPP7 GRIN1 SAPCD2 LCNL1 LOC101930307 LRRC26 MIR3621 TMEM210 NPDC1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	CLIC3 TOR4A MIR4292 CCDC183-AS1 FBXW5 PHPT1 CYSRT1 MAMDC4 LRRC26 SLC34A3 ENTPD8 MAN1B1-AS1 TUBB4B ABCA2 NSMF RNF208 TRAF2 C9orf173-AS1 NRARP TPRN FAM166A GRIN1 C9orf172 TMEM203 SAPCD2 LCNL1 LOC101930307 NPDC1 SSNA1 C8G RNF224 PRR31 STPG3 MIR7114 PTGDS C9orf142 MAN1B1 C9orf139 FUT7 PNPLA7 EDF1 NELFB ANAPC2 TMEM210 RABL6 NOXA1 LCN12 EXD3 CCDC183 UAP1L1 ENTPD2 MIR4479 DPP7 NDOR1 MIR3621
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	CLIC3 MAN1B1-AS1 PRR31 ABCA2 LCN12 PTGDS C9orf142 MAN1B1 C9orf139 UAP1L1 ENTPD2 FUT7 DPP7 SAPCD2 LCNL1 LOC101930307 NPDC1 C8G
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	CLIC3 CARD9 MIR4292 DNLZ CCDC183-AS1 MIR4673 FBXW5 SNORA17A SNHG7 PHPT1 FAM69B C9orf163 LCN15 MAMDC4 MIR4674 LRRC26 MAN1B1-AS1 ABCA2 SNORA17B TRAF2 GRIN1 NOTCH1 C9orf172 LCN10 SAPCD2 AGPAT2 LCNL1 LOC101930307 LINC01451 NPDC1 C8G SNAPC4 NALT1 MIR6722 PRR31 PTGDS C9orf142 MAN1B1 C9orf139 FUT7 EDF1 SDCCAG3 HSPC324 TMEM141 TMEM210 RABL6 MIR126 LCN8 LCN12 PMPCA CCDC183 SEC16A LOC100128593 UAP1L1 ENTPD2 INPP5E MIR4479 DPP7 LCN6 EGFL7 MIR3621
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	MAN1B1-AS1 MAN1B1 C9orf139 UAP1L1 ENTPD2 FUT7 DPP7 GRIN1 SAPCD2 LOC101930307 LRRC26 MIR3621 ANAPC2 TMEM210 NPDC1 SSNA1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	CLIC3 TOR4A MIR4292 CCDC183-AS1 FBXW5 SNORA17A SNHG7 PHPT1 FAM69B CYSRT1 LCN15 MAMDC4 LRRC26 SLC34A3 MAN1B1-AS1 TUBB4B ABCA2 SNORA17B RNF208 TRAF2 C9orf173-AS1 NRARP TPRN FAM166A GRIN1 C9orf172 LCN10 TMEM203 SAPCD2 AGPAT2 LCNL1 LOC101930307 LINC01451 NPDC1 SSNA1 C8G MIR6722 RNF224 PRR31 STPG3 PTGDS C9orf142 MAN1B1 C9orf139 FUT7 EDF1 HSPC324 TMEM141 NELFB ANAPC2 TMEM210 RABL6 MIR126 LCN8 LCN12 EXD3 CCDC183 LOC100128593 UAP1L1 ENTPD2 MIR4479 DPP7 LCN6 NDOR1 EGFL7 MIR3621
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ENTPD2 FUT7 ABCA2 NPDC1 C9orf139

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity