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See other LIME1 CNV Assays ›
Gene Symbol
LIME1
Assay Reference Genome
Location

Chr.20:63736666 on build GRCh38
Cytoband
20q13.33
Assay ID Hs02086596_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 54923

Gene Name:

 Lck interacting transmembrane adaptor 1

Gene Aliases:

 LIME, dJ583P15.4

Location:

 Chr.20:63735701-63739107 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LIME1 NM_001305654.1 NP_001292583.1
NM_001305655.1 1 207 NP_001292584.1
NM_017806.3 1 207 NP_060276.2
AK000413.1 BAA91148.1
AK054722.1 1 349
AY203957.1 AAP34480.1
BC017016.1 AAH17016.1
BI911934.1 1 233
BP368475.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2722959 Chr.20:63715664 - 63806918 on Build GRCh38 Deletion LIME1 ZGPAT ZBTB46 SLC2A4RG
nsv1139762 Chr.20:63731048 - 63737647 on Build GRCh38 Duplication LIME1 ZGPAT
nsv586614 Chr.20:63725275 - 63741460 on Build GRCh38 Gain LIME1 ZGPAT SLC2A4RG
nsv953308 Chr.20:63650148 - 63831847 on Build GRCh38 Deletion ARFRP1 LIME1 STMN3 ZBTB46-AS1 ZGPAT RTEL1 ZBTB46 SLC2A4RG RTEL1-TNFRSF6B TNFRSF6B
dgv7677n54 Chr.20:63736025 - 63738644 on Build GRCh38 Loss LIME1 ZGPAT
nsv1160690 Chr.20:63639552 - 63744287 on Build GRCh38 Deletion ARFRP1 LIME1 STMN3 ZGPAT RTEL1 ZBTB46 SLC2A4RG RTEL1-TNFRSF6B TNFRSF6B
esv7227 Chr.20:63715550 - 63807161 on Build GRCh38 Loss LIME1 ZGPAT ZBTB46 SLC2A4RG
nsv428381 Chr.20:63583375 - 64334167 on Build GRCh38 Gain+Loss ZBTB46-AS1 C20orf181 LINC00266-1 TCEA2 MYT1 MIR941-4 LKAAEAR1 OPRL1 LIME1 UCKL1 MIR941-3 ABHD16B GMEB2 UCKL1-AS1 TPD52L2 ZNF512B MIR6813 SOX18 MIR941-2 MIR1914 MIR941-1 RTEL1 ZBTB46 DNAJC5 TNFRSF6B ARFRP1 STMN3 PRPF6 MIR941-5 SAMD10 ZGPAT LINC00176 MIR647 RGS19 LOC100505771 SLC2A4RG NPBWR2 PCMTD2 RTEL1-TNFRSF6B
nsv586615 Chr.20:63734204 - 63741603 on Build GRCh38 Gain LIME1 ZGPAT SLC2A4RG
nsv1059142 Chr.20:63731978 - 63798885 on Build GRCh38 Gain LIME1 ZGPAT ZBTB46 SLC2A4RG
nsv470563 Chr.20:63486715 - 63793308 on Build GRCh38 Loss FNDC11 SRMS RTEL1 ZBTB46 PPDPF TNFRSF6B ARFRP1 LIME1 STMN3 ZGPAT PTK6 GMEB2 HELZ2 LOC100505771 SLC2A4RG EEF1A2 RTEL1-TNFRSF6B
esv2758806 Chr.20:63470996 - 63745014 on Build GRCh38 Gain+Loss FNDC11 SRMS RTEL1 ZBTB46 PPDPF KCNQ2 TNFRSF6B ARFRP1 LIME1 STMN3 ZGPAT PTK6 GMEB2 HELZ2 LOC100505771 SLC2A4RG EEF1A2 RTEL1-TNFRSF6B

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s)


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