Hs02092463_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140857043 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3	1	1161	NP_061724.1
	NM_031859.2	1	1161	NP_114065.1
	NM_031860.2	1	1161	NP_114066.1
	AF152306.1	1	995	AAD43700.1
	AF152475.1	1	995	AAD43736.1
	AF169689.1	1	995	AAF89329.1
	BC130447.1	1	1034

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
dgv10102n54	Chr.5:140851652 - 140857963 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
dgv10105n54	Chr.5:140853365 - 140857963 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
nsv599903	Chr.5:140855278 - 140857963 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB18P PCDHB19P PCDHGA4 PCDHB13 PCDHB16 PCDHGA3 PCDHB17P PCDHGA10 PCDHGA9 PCDHA1 PCDHB12 PCDHGA11 PCDHB15 TAF7 PCDHB14 PCDHB5 SLC25A2 PCDHGA5 PCDHA12 PCDHA6 PCDHB1 PCDHGA7 PCDHA13 PCDHA3 LOC101926905 PCDHAC2 PCDHA7 PCDHB10 PCDHGA8 PCDHB9 PCDHB11 PCDHGB6 PCDHA2 PCDHGA6 PCDHB8 PCDHGB1 PCDHB4 PCDHA10 PCDHB6 PCDHGB2 PCDHGB3 PCDHAC1 PCDHGA12 PCDHGB5 PCDHA11 PCDHGA1 PCDHB2 PCDHA4 PCDHA9 PCDHGB7 PCDHGB4 PCDHA8 PCDHGB8P PCDHB3 PCDHB7 PCDHA5 PCDHGA2
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA3 VTRNA1-3 PCDHA11 PCDHA7 PCDHA4 HARS PCDHA9 VTRNA1-1 PCDHA1 PCDHA2 PCDHA8 ZMAT2 PCDHA10 HARS2 PCDHA6 PCDHA5 VTRNA1-2
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA11 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA11 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1
nsv964954	Chr.5:140856140 - 140858351 on Build GRCh38	Duplication	PCDHA2 PCDHA8 PCDHA3 PCDHA7 PCDHA10 PCDHA6 PCDHA5 PCDHA4 PCDHA9 PCDHA1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding