Hs02092463_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140857043 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3	1	1161	NP_061724.1
	NM_031859.2	1	1161	NP_114065.1
	NM_031860.2	1	1161	NP_114066.1
	AF152306.1	1	995	AAD43700.1
	AF152475.1	1	995	AAD43736.1
	AF169689.1	1	995	AAF89329.1
	BC130447.1	1	1034

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
esv2421858	Chr.5:140844251 - 140857963 on Build GRCh38	Deletion	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
esv26168	Chr.5:140842564 - 140859300 on Build GRCh38	Gain	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
dgv10105n54	Chr.5:140853365 - 140857963 on Build GRCh38	Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
dgv10102n54	Chr.5:140851652 - 140857963 on Build GRCh38	Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
nsv599903	Chr.5:140855278 - 140857963 on Build GRCh38	Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA13 PCDHA6 PCDHA2 PCDHGB6 PCDHA5 PCDHGA10 PCDHA8 PCDHGB1 PCDHB3 PCDHA9 PCDHB2 PCDHGB8P PCDHGA6 PCDHGB3 PCDHGA7 PCDHGA11 LOC101926905 PCDHB13 PCDHB7 PCDHB8 PCDHGA5 PCDHAC1 PCDHB9 PCDHB15 PCDHGA2 PCDHGA8 PCDHB14 PCDHB17P PCDHAC2 PCDHB12 PCDHB6 PCDHB18P PCDHGA4 PCDHGB7 PCDHA4 PCDHB16 SLC25A2 PCDHB4 PCDHGA12 PCDHGB2 PCDHGB5 PCDHGB4 PCDHGA3 PCDHB1 PCDHA11 PCDHGA1 PCDHA1 PCDHB5 PCDHB10 PCDHGA9 TAF7 PCDHA3 PCDHB19P PCDHA10 PCDHA7 PCDHA12 PCDHB11
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA11 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA8 HARS VTRNA1-1 VTRNA1-3 PCDHA4 VTRNA1-2 PCDHA3 PCDHA9 HARS2 PCDHA10 PCDHA7 ZMAT2
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA3 PCDHA11 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
esv3890744	Chr.5:140846323 - 140857963 on Build GRCh38	Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4
nsv964954	Chr.5:140856140 - 140858351 on Build GRCh38	Duplication	PCDHA3 PCDHA9 PCDHA6 PCDHA2 PCDHA1 PCDHA5 PCDHA10 PCDHA7 PCDHA8 PCDHA4

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding