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See other SSU72 CNV Assays ›
Gene Symbol
SSU72
Assay Reference Genome
Location

Chr.1:1541798 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02100756_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 29101

Gene Name:

 SSU72 homolog, RNA polymerase II CTD phosphatase

Gene Aliases:

 HSPC182, PNAS-120

Location:

 Chr.1:1541673-1574882 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SSU72 NM_014188.2 5 1178 NP_054907.1
AF161530.1 5 918 AAF29145.1
AJ276409.1 5 966 CAC81713.1
AK001809.1 5 926 BAA91921.1
AK127149.1 3 2114
BC008070.2 5 1126 AAH08070.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv545000 Chr.1:1421170 - 1573654 on Build GRCh38 Loss ATAD3B LOC107985729 ANKRD65 SSU72 TMEM88B LOC102724312 ATAD3A VWA1 ATAD3C TMEM240
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SCNN1D SSU72 LOC100130417 AURKAIP1 LOC102724312 MXRA8 CPTP PERM1 PUSL1 MMP23B ATAD3B TTLL10-AS1 ISG15 LINC01128 TAS1R3 ATAD3C DVL1 MIR6727 SLC35E2 MRPL20 FNDC10 FAM132A TTLL10 LOC107985728 UBE2J2 ATAD3A LOC284600 LOC105378948 SDF4 HES4 LOC100288175 SAMD11 MMP23A TMEM88B AGRN MIR429 MIR6808 CDK11B LOC100288069 MIR200A LOC148413 SLC35E2B TMEM240 CPSF3L TNFRSF18 ACAP3 KLHL17 LOC107985729 ANKRD65 B3GALT6 NADK TNFRSF4 LINC00115 C1orf159 FAM41C NOC2L CDK11A LOC100287934 RNF223 MIR200B MIB2 FAM87B MIR6726 LINC01342 PLEKHN1 VWA1 CCNL2
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SCNN1D SSU72 WASH7P LOC100130417 AURKAIP1 LOC102724312 MXRA8 PUSL1 LOC100506504 ATAD3B MIR1302-2 ISG15 LOC100132287 LINC01128 TAS1R3 ATAD3C LOC105378592 TTLL10 LOC105378949 UBE2J2 ATAD3A LOC284600 DDX11L1 MTND2P28 AGRN MIR429 LOC729737 MIR6808 CDK11B LOC100288069 LOC105378591 LOC148413 LOC101928626 TMEM240 OR4F16 KLHL17 MORN1 LOC107985729 CALML6 TNFRSF4 LOC107984841 LINC00115 LOC100134822 CFAP74 FAM41C GNB1 SKI LOC105378589 RNF223 FAM138A VWA1 TMEM52 CCNL2 CPTP PERM1 MMP23B TTLL10-AS1 OR4F29 PRKCZ DVL1 MIR6727 SLC35E2 LOC102725121 MRPL20 FNDC10 FAM132A LOC107985728 FAAP20 LOC105378948 SDF4 HES4 LOC100288175 SAMD11 MMP23A TMEM88B LOC100133331 OR4F5 MIR200A GABRD LOC105378947 SLC35E2B CPSF3L TNFRSF18 ACAP3 LOC100129534 ANKRD65 B3GALT6 NADK C1orf159 NOC2L CDK11A LOC100287934 MIR6859-1 MIR6859-2 MIR6723 MIR200B MIB2 FAM87B MIR6726 LINC01342 PLEKHN1 MTND1P23
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion SCNN1D SSU72 MIR200A LOC148413 AURKAIP1 LOC102724312 MXRA8 CPTP PUSL1 TMEM240 CPSF3L MMP23B TNFRSF18 ACAP3 ATAD3B TTLL10-AS1 LOC107985729 ANKRD65 B3GALT6 TNFRSF4 TAS1R3 ATAD3C DVL1 MIR6727 MRPL20 C1orf159 FNDC10 FAM132A TTLL10 UBE2J2 ATAD3A SDF4 TMEM88B MIR200B MIB2 MIR6726 LINC01342 MIR429 VWA1 MIR6808 CDK11B CCNL2
nsv1011818 Chr.1:1394332 - 1575421 on Build GRCh38 Gain SSU72 LOC148413 LOC102724312 ATAD3A TMEM240 ATAD3B LOC107985729 ANKRD65 TMEM88B VWA1 ATAD3C MRPL20 CCNL2
esv2758913 Chr.1:1389149 - 2092899 on Build GRCh38 Gain+Loss SSU72 LOC105378591 LOC148413 GABRD LOC102724312 SLC35E2B TMEM240 MMP23B ATAD3B LOC107985729 ANKRD65 CALML6 NADK PRKCZ ATAD3C SLC35E2 MRPL20 CFAP74 FNDC10 GNB1 LOC105378949 ATAD3A CDK11A LOC105378589 MMP23A TMEM88B MIB2 VWA1 TMEM52 CDK11B CCNL2

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Function(s) Process(es)


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