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See other ATAT1 CNV Assays ›
Gene Symbol
ATAT1
Assay Reference Genome
Location

Chr.6:30646498 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02103475_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 79969

Gene Name:

 alpha tubulin acetyltransferase 1

Gene Aliases:

 C6orf134, MEC17, Nbla00487, TAT, alpha-TAT, alpha-TAT1

Location:

 Chr.6:30626842-30646823 on Build GRCh38

Assay Gene Location:

 Within Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATAT1 NM_001031722.3 NP_001026892.1
NR_033823.2 11 1280
XM_005249415.2 XP_005249472.1
XM_011514918.2 XP_011513220.1
XM_017011316.1 XP_016866805.1
BC025755.1 11 1190 AAH25755.1
BC047303.1 AAH47303.1
BM682704.1 1 340

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1074389 Chr.6:29116522 - 31446623 on Build GRCh38 Deletion MIR4640 MDC1-AS1 GTF2H4 HCG17 HLA-J SFTA2 OR10C1 PRR3 FLOT1 MDC1 PPP1R10 HCG4 HLA-F CCHCR1 HLA-L DPCR1 POU5F1 HCG20 MOG LINC01015 CDSN HCG4B LOC554223 GNL1 TRIM15 DHX16 HLA-K TRIM31-AS1 HCG27 TCF19 PSORS1C2 DDR1 MICA IER3 HCG22 VARS2 ZNRD1ASP SNORD32B MIR877 ATAT1 TRIM39 HCG18 RPP21 MUC22 HLA-F-AS1 OR14J1 PSORS1C3 OR12D2 PSORS1C1 UBD OR11A1 TRIM39-RPP21 OR12D3 HLA-B PPP1R11 TRIM40 HLA-H LOC105375014 HCG8 TUBB LINC00243 MUC21 OR5V1 ABCF1 PPP1R18 GABBR1 TRIM10 IFITM4P MAS1L MRPS18B OR2H2 HCG9 C6orf136 HLA-E HLA-C OR2H1 ZNRD1 NRM HLA-G OR2J2 RNF39 HLA-A C6orf15 ZFP57 LOC101929006 MIR6891 TRIM31 TRIM26
nsv830626 Chr.6:30590287 - 30765128 on Build GRCh38 Loss IER3 PPP1R18 ATAT1 HCG20 MDC1-AS1 MRPS18B C6orf136 DHX16 FLOT1 NRM MDC1 PPP1R10 TUBB ABCF1
nsv601481 Chr.6:30454855 - 31316476 on Build GRCh38 Loss IER3 HCG22 VARS2 MIR877 ATAT1 MIR4640 MDC1-AS1 GTF2H4 MUC22 SFTA2 PSORS1C3 PSORS1C1 PRR3 FLOT1 LOC105375014 MDC1 PPP1R10 TUBB LINC00243 MUC21 CCHCR1 ABCF1 DPCR1 POU5F1 PPP1R18 HCG20 MRPS18B CDSN C6orf136 GNL1 HLA-E DHX16 HLA-C NRM HCG27 TCF19 PSORS1C2 C6orf15 DDR1
nsv1122126 Chr.6:28628023 - 31244023 on Build GRCh38 Deletion LOC100129636 MIR4640 MDC1-AS1 GTF2H4 HCG17 HLA-J SFTA2 OR10C1 PRR3 FLOT1 MDC1 PPP1R10 HCG4 LINC01556 HLA-F CCHCR1 HLA-L OR2W1 DPCR1 POU5F1 HCG20 MOG LINC01015 CDSN HCG4B LOC554223 GNL1 TRIM15 DHX16 ZNF311 HLA-K TRIM31-AS1 HCG27 TCF19 PSORS1C2 HCG14 DDR1 IER3 LINC00533 HCG22 VARS2 ZNRD1ASP SNORD32B MIR877 ATAT1 TRIM39 HCG18 RPP21 MUC22 HLA-F-AS1 OR14J1 PSORS1C3 OR2B3 OR12D2 PSORS1C1 UBD OR11A1 TRIM39-RPP21 OR12D3 PPP1R11 TRIM40 HLA-H LOC105375014 HCG8 TUBB LINC00243 MUC21 OR5V1 ABCF1 TRIM27 PPP1R18 GABBR1 LINC01623 TRIM10 IFITM4P MAS1L MRPS18B OR2H2 OR2J3 HCG9 C6orf136 HCG16 HLA-E OR2H1 ZNRD1 NRM HLA-G OR2J2 RNF39 HLA-A C6orf15 ZFP57 LOC101929006 TRIM31 TRIM26
nsv1144137 Chr.6:29720323 - 31338123 on Build GRCh38 Deletion MIR4640 MDC1-AS1 GTF2H4 HCG17 HLA-J SFTA2 PRR3 FLOT1 MDC1 PPP1R10 HCG4 HLA-F CCHCR1 HLA-L DPCR1 POU5F1 HCG20 CDSN HCG4B LOC554223 GNL1 TRIM15 DHX16 HLA-K TRIM31-AS1 HCG27 TCF19 PSORS1C2 DDR1 IER3 HCG22 VARS2 ZNRD1ASP MIR877 ATAT1 TRIM39 HCG18 RPP21 MUC22 HLA-F-AS1 PSORS1C3 PSORS1C1 TRIM39-RPP21 PPP1R11 TRIM40 HLA-H LOC105375014 HCG8 TUBB LINC00243 MUC21 ABCF1 PPP1R18 TRIM10 IFITM4P MRPS18B HCG9 C6orf136 HLA-E HLA-C ZNRD1 NRM HLA-G RNF39 HLA-A C6orf15 TRIM31 TRIM26
nsv601264 Chr.6:29883666 - 31320716 on Build GRCh38 Loss MIR4640 MDC1-AS1 GTF2H4 HCG17 HLA-J SFTA2 PRR3 FLOT1 MDC1 PPP1R10 CCHCR1 HLA-L DPCR1 POU5F1 HCG20 CDSN HCG4B GNL1 TRIM15 DHX16 HLA-K TRIM31-AS1 HCG27 TCF19 PSORS1C2 DDR1 IER3 HCG22 VARS2 ZNRD1ASP MIR877 ATAT1 TRIM39 HCG18 RPP21 MUC22 PSORS1C3 PSORS1C1 TRIM39-RPP21 PPP1R11 TRIM40 HLA-H LOC105375014 HCG8 TUBB LINC00243 MUC21 ABCF1 PPP1R18 TRIM10 MRPS18B HCG9 C6orf136 HLA-E HLA-C ZNRD1 NRM RNF39 HLA-A C6orf15 TRIM31 TRIM26
esv2731791 Chr.6:30404802 - 31346410 on Build GRCh38 Deletion IER3 HCG22 VARS2 MIR877 ATAT1 MIR4640 MDC1-AS1 GTF2H4 MUC22 SFTA2 PSORS1C3 PSORS1C1 PRR3 FLOT1 LOC105375014 MDC1 PPP1R10 TUBB LINC00243 MUC21 CCHCR1 ABCF1 DPCR1 POU5F1 PPP1R18 HCG20 MRPS18B CDSN C6orf136 GNL1 HLA-E DHX16 HLA-C NRM HCG27 TCF19 PSORS1C2 C6orf15 DDR1
esv2670269 Chr.6:30498650 - 31067145 on Build GRCh38 Deletion IER3 HCG22 VARS2 MIR877 ATAT1 MIR4640 MDC1-AS1 GTF2H4 MUC22 SFTA2 PRR3 FLOT1 LOC105375014 MDC1 PPP1R10 TUBB LINC00243 MUC21 ABCF1 DPCR1 PPP1R18 HCG20 MRPS18B C6orf136 GNL1 DHX16 NRM DDR1
esv3411275 Chr.6:29981607 - 31490616 on Build GRCh38 Duplication MIR4640 MDC1-AS1 GTF2H4 HCG26 HCG17 HLA-J SFTA2 PRR3 FLOT1 MDC1 PPP1R10 CCHCR1 HLA-L DPCR1 POU5F1 HCG20 CDSN GNL1 TRIM15 DHX16 TRIM31-AS1 HCG27 TCF19 PSORS1C2 DDR1 MICA IER3 HCG22 VARS2 ZNRD1ASP MIR877 LOC102725068 ATAT1 TRIM39 HCG18 RPP21 MUC22 PSORS1C3 PSORS1C1 TRIM39-RPP21 HLA-B PPP1R11 TRIM40 LOC105375014 HCG8 TUBB LINC00243 MUC21 ABCF1 PPP1R18 TRIM10 MRPS18B C6orf136 HLA-E HLA-C ZNRD1 NRM HCP5 RNF39 C6orf15 MIR6891 TRIM31 TRIM26

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