Hs02113816_cn

• Gene Symbol: TMEM80
• Assay Reference Genome Location: Chr.11:703770 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 283232
• Gene Name: transmembrane protein 80
• Gene Aliases: -
• Location: Chr.11:695386-705028 on Build GRCh38
• Assay Gene Location: Within Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TMEM80	NM_001042463.2	5	1289	NP_001035928.2
	NM_001276253.1	4	443	NP_001263182.1
	NM_001276274.1			NP_001263203.1
	NM_174940.3	5	1265	NP_777600.3
	XM_006718206.3			XP_006718269.3
	XM_017017600.1			XP_016873089.1
	AI739035.1
	AK124309.1
	AK302585.1
	BC008671.1	5	1213
	BM874316.1	3	202
	CA443683.1	1	376
	CB044312.1	1	367

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	PHRF1 TALDO1 PIDD1 MUC2 PANO1 LOC143666 RASSF7 TOLLIP CDHR5 DEAF1 HRAS RPLP2 PNPLA2 SLC25A22 DRD4 ANO9 MIR210HG TSPAN4 MIR210 LOC101927503 LMNTD2 SCT MUC5B MIR6744 EPS8L2 CEND1 MUC5AC SNORA52 MUC6 LOC101059906 B4GALNT4 LOC171391 CHID1 PTDSS2 PKP3 TMEM80 LRRC56 PDDC1 SIGIRR AP2A2 POLR2L IRF7 RNH1 CRACR2B CD151
nsv522733	Chr.11:702250 - 752059 on Build GRCh38	Loss	TMEM80 EPS8L2 TALDO1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	PHRF1 TALDO1 PIDD1 MUC2 PANO1 LOC143666 RASSF7 TOLLIP CDHR5 DEAF1 HRAS RPLP2 PNPLA2 SLC25A22 DRD4 ANO9 MIR210HG TSPAN4 MIR210 LOC101927503 LMNTD2 SCT MUC5B MIR6744 EPS8L2 CEND1 MUC5AC SNORA52 MUC6 LOC101059906 LOC171391 CHID1 PTDSS2 TMEM80 LRRC56 PDDC1 SIGIRR AP2A2 POLR2L IRF7 RNH1 TOLLIP-AS1 CRACR2B CD151
nsv832043	Chr.11:631027 - 758602 on Build GRCh38	Loss	TMEM80 DRD4 EPS8L2 TALDO1 DEAF1
nsv552869	Chr.11:702097 - 727446 on Build GRCh38	Loss	TMEM80 EPS8L2
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	PHRF1 TALDO1 PIDD1 PANO1 LOC143666 RASSF7 CDHR5 DEAF1 HRAS RPLP2 PNPLA2 SLC25A22 DRD4 ANO9 MIR210HG TSPAN4 MIR210 LMNTD2 SCT EPS8L2 CEND1 SNORA52 LOC101059906 B4GALNT4 LOC171391 CHID1 PTDSS2 PKP3 TMEM80 LRRC56 PDDC1 SIGIRR AP2A2 POLR2L IRF7 RNH1 CRACR2B CD151
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	PHRF1 TALDO1 PIDD1 PANO1 LOC143666 RASSF7 CDHR5 DEAF1 HRAS RPLP2 PNPLA2 SLC25A22 DRD4 MIR210HG TSPAN4 MIR210 LMNTD2 SCT EPS8L2 CEND1 SNORA52 LOC101059906 LOC171391 CHID1 PTDSS2 TMEM80 LRRC56 PDDC1 POLR2L IRF7 RNH1 CRACR2B CD151

More Information

Additional Information:

For this assay, SNP(s) [rs73407142] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation