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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2179656 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02116952_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Within Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 18 3744 NP_065815.1
AB037727.1 10 2881 BAA92544.1
AF451977.1 18 3810 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PRSS29P MSLN LOC101929280 MIR1225 NPRL3 MIR3176 POLR3K HS3ST6 PKD1 MIR3177 FLJ42627 LOC105371045 SNORD60 RAB40C LINC00235 HBZ PRR25 MRPL28 MIR3178 LINC00254 NOXO1 HAGH GNG13 PTX4 RPL23AP5 SLC9A3R2 MCRIP2 JMJD8 SSTR5-AS1 RPUSD1 TPSB2 SYNGR3 CASKIN1 MPG GNPTG MIR6859-4 ATP6V0C FAM234A RGS11 FAM173A ZNF598 LMF1-AS1 ARHGDIG SOX8 LOC105371038 ECI1 HAGHL BAIAP3 DNASE1L2 GFER LUC7L METRN RAB11FIP3 WASIR2 ABCA17P SNHG19 WFIKKN1 TPSG1 PRSS27 MIR662 CEMP1 MIR6768 DECR2 SNORA64 SNORA78 C16orf91 C1QTNF8 LOC107987233 LOC105371047 CRAMP1 MRPS34 TSR3 PGP NME4 FBXL16 TMEM204 HBM IGFALS HBQ1 LOC100287175 TMEM8A TELO2 RAB26 TPSAB1 HN1L TRAF7 PRR35 TBL3 NDUFB10 METTL26 NTN3 NARFL SNRNP25 CCDC154 MIR3677 SSTR5 MIR4717 RNF151 LOC107984876 KCTD5 CACNA1H RHBDF1 UNKL EME2 BRICD5 HBA1 UBE2I ABCA3 CAPN15 MSRB1 RNPS1 CLCN7 LOC105371049 C16orf59 RPS2 SNORA10 IFT140 FAHD1 SPSB3 MIR4516 MIR6767 MAPK8IP3 WDR90 LOC105371046 LOC106660606 NHLRC4 DDX11L10 CHTF18 MEIOB PIGQ RPL3L LOC729652 AMDHD2 RHBDL1 MIR5587 TPSD1 ERVK13-1 CCNF TSC2 PDIA2 NPW LMF1 LOC105371184 STUB1 TBC1D24 MIR3180-5 MIR6511B1 RHOT2 LOC100134368 MLST8 NUBP2 SNHG9 WDR24 PDPK1 NTHL1 MIR940 LOC652276 NME3 CCDC78 HBA2 AXIN1 E4F1
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss ECI1 RAB26 DNASE1L2 GFER MIR1225 TRAF7 TBL3 SNHG19 PKD1 TSC2 NPW SNORD60 MIR3180-5 MIR6511B1 BRICD5 MLST8 NOXO1 SLC9A3R2 RNPS1 LOC105371049 NTHL1 SYNGR3 CASKIN1 PGP MIR4516 ZNF598 E4F1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss ECI1 BRICD5 RAB26 MLST8 DNASE1L2 MIR1225 TRAF7 LOC105371049 SNHG19 CASKIN1 PGP MIR4516 PKD1 TSC2 SNORD60 MIR3180-5 E4F1 MIR6511B1
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss ECI1 BRICD5 RAB26 MLST8 DNASE1L2 TRAF7 RNPS1 SNHG19 MIR940 CASKIN1 PGP MIR3677 LOC106660606 SNORD60 E4F1
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss SNHG19 CASKIN1 MIR4516 PKD1 RAB26 TSC2 MIR1225 TRAF7 SNORD60 MIR3180-5 LOC105371049 MIR6511B1
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain CASKIN1 TRAF7
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain ECI1 RAB26 DNASE1L2 MIR1225 TRAF7 ABCA17P LOC729652 SNHG19 NTN3 AMDHD2 PKD1 MIR3677 CCNF MIR4717 TSC2 CEMP1 MIR6768 SNORD60 TBC1D24 MIR3180-5 MIR6511B1 BRICD5 MIR3178 MLST8 ABCA3 PDPK1 RNPS1 LOC105371049 C16orf59 MIR940 CASKIN1 PGP ATP6V0C MIR4516 MIR6767 LOC652276 LOC106660606 E4F1
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss ECI1 MIR940 BRICD5 CASKIN1 PGP MIR3677 MLST8 DNASE1L2 TRAF7 LOC106660606 RNPS1 E4F1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion ECI1 BRICD5 RAB26 MLST8 DNASE1L2 ABCA3 TRAF7 RNPS1 SNHG19 MIR940 CASKIN1 PGP MIR3677 MIR4717 LOC106660606 SNORD60 E4F1

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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