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See other CDHR5 CNV Assays ›
Gene Symbol
CDHR5
Assay Reference Genome
Location

Chr.11:620347 on build GRCh38
Cytoband
11p15.5
Assay ID Hs02120483_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 53841

Gene Name:

 cadherin related family member 5

Gene Aliases:

 MLPCDH, MU-PCDH, MUCDHL, MUPCDH

Location:

 Chr.11:616565-625067 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CDHR5 NM_001171968.1 NP_001165439.1
NM_021924.4 NP_068743.2
NM_031264.3 NP_112554.2
XM_006718253.3 XP_006718316.1
XM_011520188.2 XP_011518490.1
XM_011520189.2 XP_011518491.1
XM_011520190.2 XP_011518492.1
XM_011520191.2 XP_011518493.1
AF258675.1 AAG16732.1
AF258676.1 AAG16733.1
AF276242.1 AAG30821.1
AF301909.1 AAG33495.1
AK000226.1 BAA91021.1
AK000384.1 BAA91130.1
AK025012.1 BAB15052.1
AK300991.1
AK308040.1
AK309157.1
AY358368.1 AAQ88734.1
BC038405.1 AAH38405.1
DQ491193.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv951270 Chr.11:528401 - 628100 on Build GRCh38 Deletion CDHR5 LRRC56 MIR210 HRAS LMNTD2 MIR210HG LOC101059906 SCT RASSF7 LOC143666 IRF7 PHRF1
nsv552861 Chr.11:589246 - 662407 on Build GRCh38 Loss DRD4 CDHR5 SCT IRF7 PHRF1 DEAF1
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss PTDSS2 AP2A2 CD151 TMEM80 ANO9 MUC5B MIR6744 LOC101927503 LOC143666 PHRF1 DEAF1 CRACR2B PIDD1 EPS8L2 MIR210 SIGIRR MUC2 CHID1 TOLLIP-AS1 LOC171391 DRD4 CDHR5 TSPAN4 TOLLIP HRAS TALDO1 MUC5AC RASSF7 CEND1 PDDC1 RPLP2 LRRC56 RNH1 SLC25A22 PANO1 PNPLA2 LMNTD2 MIR210HG LOC101059906 SCT IRF7 POLR2L SNORA52 MUC6
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain DRD4 CDHR5 HRAS RASSF7 LOC143666 PHRF1 DEAF1 LRRC56 MIR210 LMNTD2 MIR210HG SCT IRF7
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion PTDSS2 AP2A2 CD151 TMEM80 ANO9 LOC143666 PHRF1 DEAF1 CRACR2B PIDD1 EPS8L2 MIR210 SIGIRR CHID1 LOC171391 DRD4 CDHR5 TSPAN4 HRAS TALDO1 RASSF7 PKP3 CEND1 B4GALNT4 PDDC1 RPLP2 LRRC56 RNH1 SLC25A22 PANO1 PNPLA2 LMNTD2 MIR210HG LOC101059906 SCT IRF7 POLR2L SNORA52
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain DRD4 CDHR5 PTDSS2 HRAS RASSF7 LOC143666 PHRF1 DEAF1 LRRC56 RNH1 MIR210 LMNTD2 MIR210HG LOC101059906 SCT IRF7
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion PTDSS2 CD151 TMEM80 LOC143666 PHRF1 DEAF1 CRACR2B PIDD1 EPS8L2 MIR210 CHID1 LOC171391 DRD4 CDHR5 TSPAN4 HRAS TALDO1 RASSF7 CEND1 PDDC1 RPLP2 LRRC56 RNH1 SLC25A22 PANO1 PNPLA2 LMNTD2 MIR210HG LOC101059906 SCT IRF7 POLR2L SNORA52
dgv1523n54 Chr.11:557342 - 656940 on Build GRCh38 Gain DRD4 CDHR5 MIR210 LMNTD2 MIR210HG SCT RASSF7 LOC143666 IRF7 PHRF1 DEAF1
nsv552865 Chr.11:612843 - 626730 on Build GRCh38 Loss CDHR5 SCT IRF7
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss CDHR5 PTDSS2 ANO9 PGGHG HRAS RASSF7 LOC143666 IFITM2 PKP3 PHRF1 B4GALNT4 LRRC56 RNH1 IFITM5 MIR210 SIGIRR IFITM1 LMNTD2 MIR210HG LOC101059906 IRF7 IFITM3
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss PTDSS2 AP2A2 CD151 TMEM80 ANO9 MUC5B MIR6744 LOC101927503 LOC143666 PHRF1 DEAF1 CRACR2B PIDD1 EPS8L2 MIR210 SIGIRR MUC2 CHID1 LOC171391 DRD4 CDHR5 TSPAN4 TOLLIP HRAS TALDO1 MUC5AC RASSF7 PKP3 CEND1 B4GALNT4 PDDC1 RPLP2 LRRC56 RNH1 SLC25A22 PANO1 PNPLA2 LMNTD2 MIR210HG LOC101059906 SCT IRF7 POLR2L SNORA52 MUC6
esv2762889 Chr.11:606294 - 653614 on Build GRCh38 Loss DRD4 CDHR5 SCT IRF7 PHRF1 DEAF1
nsv528415 Chr.11:558884 - 620599 on Build GRCh38 Loss CDHR5 MIR210 LMNTD2 MIR210HG RASSF7 LOC143666 IRF7 PHRF1

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More Information


Additional Information:

For this assay, SNP(s) [rs117875177] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)


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