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See other SPSB3 CNV Assays ›
Gene Symbol
SPSB3
Assay Reference Genome
Location

Chr.16:1778516 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02127375_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 90864

Gene Name:

 splA/ryanodine receptor domain and SOCS box containing 3

Gene Aliases:

 C16orf31, SSB3

Location:

 Chr.16:1776712-1782605 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPSB3 NM_001324081.1 3 292 NP_001311010.1
NM_080861.3 3 314 NP_543137.2
XM_005255673.4 3 504 XP_005255730.1
AF403028.1 2 223 AAL57347.1
AK074190.1 3 278
AK302041.1 3 446
BC007588.1 3 260
BC024244.1 3 278 AAH24244.1
BC041897.1 3 975 AAH41897.1
BC047441.1 3 256
BI768095.1 3 268
BM836743.1 3 338

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457335 Chr.16:1729694 - 1789022 on Build GRCh38 Loss NME3 NUBP2 MIR3177 MAPK8IP3 SPSB3 MRPS34 EME2
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RGS11 METTL26 MIR3677 FAHD1 MIR6859-4 JMJD8 PTX4 HBQ1 IGFALS NME3 CACNA1H TPSD1 RNF151 CASKIN1 FLJ42627 ERVK13-1 LINC00235 IFT140 MSLN MIR4717 FBXL16 ECI1 HBM NUBP2 CHTF18 LOC107984876 RPUSD1 LOC100287175 TPSAB1 SNORA64 ABCA17P SNORD60 TPSB2 BAIAP3 C1QTNF8 CCDC78 LOC106660606 RNPS1 MCRIP2 C16orf91 SYNGR3 MIR3180-5 CLCN7 AMDHD2 BRICD5 WDR90 PDPK1 PRR35 SNHG19 LMF1 WFIKKN1 WASIR2 PDIA2 LOC101929280 NPW TBC1D24 RAB40C C16orf59 HBA2 DDX11L10 RHBDF1 TSC2 FAM173A LINC00254 MIR4516 GFER NOXO1 STUB1 MIR6767 RHBDL1 LOC105371047 ATP6V0C GNPTG NARFL PRR25 RAB26 SNHG9 RHOT2 NTN3 CCNF MIR3178 HBA1 NDUFB10 TMEM8A FAM234A CAPN15 DECR2 HS3ST6 WDR24 MIR6511B1 TRAF7 RPL3L MEIOB LOC105371184 LOC729652 METRN TMEM204 TSR3 CRAMP1 HAGHL PRSS29P NHLRC4 LOC100134368 MRPL28 SSTR5-AS1 NTHL1 MIR3176 MLST8 PKD1 RPL23AP5 RAB11FIP3 LOC652276 MIR5587 E4F1 GNG13 LUC7L CEMP1 MIR3177 MIR940 MAPK8IP3 MIR662 MIR6768 PRSS27 LOC105371038 SLC9A3R2 TELO2 UNKL SSTR5 EME2 CCDC154 LOC107987233 LOC105371049 TPSG1 SOX8 SPSB3 DNASE1L2 HN1L PIGQ NPRL3 LOC105371045 MPG ABCA3 HAGH UBE2I POLR3K KCTD5 ZNF598 MRPS34 MSRB1 LMF1-AS1 SNORA78 ARHGDIG AXIN1 SNORA10 PGP MIR1225 TBL3 SNRNP25 RPS2 HBZ LOC105371046 NME4
esv3892756 Chr.16:1764390 - 1780436 on Build GRCh38 Loss NME3 MAPK8IP3 SPSB3 MRPS34 EME2
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion NME3 NUBP2 MIR3177 MAPK8IP3 IGFALS SPSB3 MRPS34 EME2
nsv571171 Chr.16:1757779 - 1804539 on Build GRCh38 Gain+Loss NME3 NUBP2 MAPK8IP3 IGFALS SPSB3 MRPS34 EME2
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss NUBP2 HN1L HAGH IGFALS MRPS34 EME2 NME3 MIR3177 MAPK8IP3 IFT140 SPSB3 LOC105371046 CRAMP1
nsv471069 Chr.16:1754356 - 1791032 on Build GRCh38 Loss NME3 NUBP2 MAPK8IP3 IGFALS SPSB3 MRPS34 EME2
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss NUBP2 HN1L FAHD1 HAGH TELO2 IGFALS MRPS34 LOC105371047 EME2 NME3 MIR3177 MAPK8IP3 MEIOB TMEM204 IFT140 SPSB3 LOC105371046 CRAMP1
nsv827500 Chr.16:1761258 - 1795126 on Build GRCh38 Gain NME3 NUBP2 MAPK8IP3 IGFALS SPSB3 MRPS34 EME2
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss NUBP2 HN1L FAHD1 HAGH IGFALS MRPS34 EME2 NME3 MIR3177 MAPK8IP3 MEIOB SPSB3 CRAMP1
nsv571173 Chr.16:1767596 - 1780436 on Build GRCh38 Loss NME3 MAPK8IP3 SPSB3 MRPS34 EME2
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion NME3 NUBP2 MIR3177 FAHD1 MAPK8IP3 HAGH IGFALS SPSB3 MRPS34 EME2
nsv571170 Chr.16:1752231 - 1791032 on Build GRCh38 Loss NME3 NUBP2 MAPK8IP3 IGFALS SPSB3 MRPS34 EME2

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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