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See other NELFE CNV Assays ›
Gene Symbol
NELFE
Assay Reference Genome
Location

Chr.6:31954301 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02136049_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7936

Gene Name:

 negative elongation factor complex member E

Gene Aliases:

 D6S45, NELF-E, RD, RDBP, RDP

Location:

 Chr.6:31952087-31959087 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Exon 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
NELFE NM_002904.5 NP_002895.3
XM_006715205.3 XP_006715268.1
XM_011514913.2 XP_011513215.1
XM_017011299.1 XP_016866788.1
AK300717.1
AK300898.1
AK302652.1
AK303152.1
BC025235.1 AAH25235.1
BC050617.2 AAH50617.1
JQ313904.1
L03411.1 AAC37523.1
X16105.1 CAA34231.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss HSPA1A MIR6833 C2 HLA-DQA1 PRRT1 C4B HCG23 TNXA AGPAT1 MIR6721 C4A SNORD48 PBX2 C6orf10 CFB C6orf48 GPSM3 PPT2-EGFL8 ATF6B SNORD52 C2-AS1 CYP21A1P STK19 SLC44A4 DXO PPT2 HLA-DRA EGFL8 HLA-DQB1-AS1 MIR1236 HLA-DRB5 NOTCH4 SKIV2L EHMT2 HLA-DQB1 CYP21A2 AGER BTNL2 FKBPL LOC101929163 LOC100507547 RNF5 ZBTB12 HSPA1B HLA-DRB6 NELFE TNXB NEU1 HLA-DRB1
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss CFB ATF6B C2 CYP21A2 C4B TNXA C2-AS1 CYP21A1P STK19 DXO C4A NELFE MIR1236 SKIV2L TNXB
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MSH5 NCR3 HSPA1A MIR6833 LY6G6D C2 DDAH2 PRRT1 MICB HCP5 C4B HCG23 TNXA SAPCD1 AGPAT1 LOC102725068 LSM2 MIR6721 C4A SNORD48 LY6G6F C6orf25 PBX2 C6orf10 ABHD16A LTB HCG26 MCCD1 BAG6 AIF1 CFB DDX39B C6orf48 ATP6V1G2-DDX39B GPSM3 PPT2-EGFL8 ATF6B VWA7 LTA DDX39B-AS1 SNORD52 SNORD84 C2-AS1 CYP21A1P TNF STK19 C6orf47 SLC44A4 DXO LST1 PPT2 HLA-DRA MIR6832 EGFL8 MIR1236 HLA-DRB5 NFKBIL1 NOTCH4 SKIV2L EHMT2 CYP21A2 AGER BTNL2 LY6G5B FKBPL LOC101929163 LOC100507547 LY6G6C SNORD117 LOC100287329 LY6G6E RNF5 ATP6V1G2 PRRC2A ZBTB12 HSPA1B HLA-DRB6 MIR4646 LY6G5C SAPCD1-AS1 NELFE MSH5-SAPCD1 CLIC1 CSNK2B GPANK1 SNORA38 HSPA1L VARS APOM TNXB NEU1 HLA-DRB1
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MSH5 NCR3 HSPA1A LY6G6D C2 DDAH2 MICB HCP5 C4B TNXA SAPCD1 LOC102725068 LSM2 C4A SNORD48 LY6G6F C6orf25 MIR6891 ABHD16A LTB HCG26 HLA-B MCCD1 BAG6 AIF1 CFB DDX39B C6orf48 ATP6V1G2-DDX39B VWA7 LTA DDX39B-AS1 SNORD52 SNORD84 C2-AS1 CYP21A1P TNF STK19 C6orf47 SLC44A4 DXO LST1 MIR6832 MIR1236 NFKBIL1 SKIV2L EHMT2 CYP21A2 LY6G5B LY6G6C SNORD117 LOC100287329 LY6G6E MICA ATP6V1G2 PRRC2A ZBTB12 HSPA1B MIR4646 LY6G5C SAPCD1-AS1 NELFE MSH5-SAPCD1 CLIC1 CSNK2B GPANK1 SNORA38 HSPA1L VARS APOM TNXB NEU1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HSPA1A MIR6833 ZBTB9 PSMB8 DDAH2 HLA-DQA1 AGPAT1 LOC102725068 C4A SNORD48 LY6G6F C6orf25 PBX2 C6orf10 B3GALT4 LTB HCG26 DDX39B RING1 GPSM3 PPT2-EGFL8 VWA7 SNORD52 PPP1R2P1 SNORD84 PSMB8-AS1 C2-AS1 CYP21A1P TNF STK19 PPT2 MIR6832 EGFL8 HLA-DQB1-AS1 MIR1236 HLA-DRB5 NFKBIL1 NOTCH4 RGL2 HLA-DQB1 BRD2 AGER LY6G5B LOC101929163 HLA-DOA LOC100507547 TAPBP SNORD117 LOC100287329 SYNGAP1 LY6G6E ATP6V1G2 MIR5004 HLA-DPB2 ZBTB12 HLA-DRB6 CUTA COL11A2 LY6G5C PSMB9 PHF1 HSD17B8 SAPCD1-AS1 HLA-DPB1 CSNK2B SNORA38 HLA-DRB1 MSH5 NCR3 MIR6873 LY6G6D C2 PRRT1 MICB HLA-DQA2 HCP5 C4B HCG23 TNXA HCG24 SAPCD1 MIR6834 LSM2 MIR6721 ABHD16A MIR219A1 RPS18 MCCD1 BAG6 SLC39A7 AIF1 CFB C6orf48 ATP6V1G2-DDX39B ATF6B HLA-DQB2 LTA DDX39B-AS1 C6orf47 SLC44A4 DXO LST1 HLA-DPA1 HLA-DRA MIR3135B SKIV2L VPS52 EHMT2 KIFC1 CYP21A2 TAP1 ZBTB22 HLA-DMA BTNL2 FKBPL RXRB LY6G6C LOC100294145 HLA-DMB RNF5 PFDN6 HLA-DOB PRRC2A HSPA1B DAXX MIR4646 NELFE MSH5-SAPCD1 TAP2 CLIC1 GPANK1 WDR46 HSPA1L VARS APOM TNXB NEU1 HCG25
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HSPA1A MIR6833 ZBTB9 PSMB8 DDAH2 HLA-DQA1 AGPAT1 LOC102725068 C4A SNORD48 LY6G6F C6orf25 PBX2 C6orf10 B3GALT4 LTB HCG26 DDX39B RING1 GPSM3 PPT2-EGFL8 VWA7 SNORD52 PPP1R2P1 SNORD84 PSMB8-AS1 C2-AS1 CYP21A1P TNF STK19 PPT2 MIR6832 EGFL8 HLA-DQB1-AS1 MIR1236 HLA-DRB5 NFKBIL1 NOTCH4 RGL2 HLA-DQB1 BRD2 AGER LY6G5B LOC101929163 HLA-DOA LOC100507547 TAPBP SNORD117 LOC100287329 SYNGAP1 LY6G6E ATP6V1G2 MIR5004 HLA-DPB2 ZBTB12 HLA-DRB6 CUTA COL11A2 LY6G5C PSMB9 PHF1 HSD17B8 SAPCD1-AS1 HLA-DPB1 CSNK2B SNORA38 HLA-DRB1 MSH5 NCR3 MIR6873 LY6G6D C2 PRRT1 MICB HLA-DQA2 HCP5 C4B HCG23 TNXA HCG24 SAPCD1 MIR6834 LSM2 MIR6721 ABHD16A MIR219A1 RPS18 MCCD1 BAG6 SLC39A7 AIF1 CFB C6orf48 ATP6V1G2-DDX39B ATF6B HLA-DQB2 LTA DDX39B-AS1 C6orf47 SLC44A4 DXO LST1 HLA-DPA1 HLA-DRA MIR3135B SKIV2L VPS52 EHMT2 KIFC1 CYP21A2 TAP1 ZBTB22 HLA-DMA BTNL2 FKBPL RXRB LY6G6C LOC100294145 HLA-DMB RNF5 PFDN6 HLA-DOB PRRC2A HSPA1B DAXX MIR4646 NELFE MSH5-SAPCD1 TAP2 CLIC1 GPANK1 WDR46 HSPA1L VARS APOM TNXB NEU1 HCG25
nsv830628 Chr.6:31919777 - 31979823 on Build GRCh38 Loss STK19 CFB DXO NELFE C2 MIR1236 SKIV2L C2-AS1
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MSH5 NCR3 HSPA1A MIR6833 LY6G6D C2 DDAH2 PRRT1 MICB HCP5 C4B HCG23 TNXA SAPCD1 AGPAT1 LOC102725068 LSM2 MIR6721 C4A SNORD48 LY6G6F C6orf25 PBX2 C6orf10 MIR6891 ABHD16A LTB HCG26 HLA-B MCCD1 BAG6 AIF1 CFB DDX39B C6orf48 ATP6V1G2-DDX39B GPSM3 PPT2-EGFL8 ATF6B VWA7 LTA DDX39B-AS1 SNORD52 SNORD84 C2-AS1 CYP21A1P TNF STK19 C6orf47 SLC44A4 DXO LST1 PPT2 HLA-DRA MIR6832 EGFL8 MIR1236 NFKBIL1 NOTCH4 SKIV2L EHMT2 CYP21A2 AGER BTNL2 LY6G5B FKBPL LOC101929163 LOC100507547 LY6G6C SNORD117 LOC100287329 LY6G6E RNF5 MICA ATP6V1G2 PRRC2A ZBTB12 HSPA1B MIR4646 LY6G5C SAPCD1-AS1 NELFE MSH5-SAPCD1 CLIC1 CSNK2B GPANK1 SNORA38 HSPA1L VARS APOM TNXB NEU1

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