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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32170441 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02142141_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 7 - Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 NP_006402.1
NM_032741.4 NP_116130.2
XM_005248805.3 XP_005248862.1
XM_005248806.2 XP_005248863.1
XM_011514234.1 XP_011512536.1
AF007145.1 AAC19153.1
AF218034.1 AAG17276.1
AK056346.1
AK058025.1
AK129818.1
AK299252.1
AK315950.1
BC002402.2 AAH02402.1
BC003007.1 AAH03007.1
BC004310.1 AAH04310.1
BC090849.1 AAH90849.1
U56417.1 AAB58775.1
U75971.1 AAB96378.1
Y09565.1 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PPT2-EGFL8 AGPAT1 LOC100507547 RNF5 EGFL8 MIR6833 AGER ATF6B GPSM3 PBX2 MIR6721 FKBPL TNXB PRRT1 NOTCH4 PPT2
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss HLA-DQB1-AS1 SLC44A4 C4B C2-AS1 GPSM3 C6orf48 FKBPL TNXA CFB NEU1 ZBTB12 PPT2 C6orf10 HLA-DRB5 LOC100507547 RNF5 AGER CYP21A2 STK19 HLA-DRB6 SKIV2L HLA-DQA1 MIR6721 MIR1236 DXO HLA-DRB1 TNXB SNORD52 BTNL2 PPT2-EGFL8 AGPAT1 C2 C4A EGFL8 PBX2 HSPA1B HCG23 SNORD48 HSPA1A PRRT1 EHMT2 NOTCH4 NELFE MIR6833 ATF6B CYP21A1P HLA-DQB1 HLA-DRA LOC101929163
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss PPT2-EGFL8 HLA-DQB1-AS1 AGPAT1 C4A EGFL8 C4B MIR3135B GPSM3 PBX2 FKBPL HCG23 TNXA PRRT1 NOTCH4 PPT2 C6orf10 HLA-DRB5 LOC100507547 RNF5 MIR6833 AGER ATF6B CYP21A2 CYP21A1P HLA-DRB6 HLA-DQA1 HLA-DQA2 HLA-DQB1 MIR6721 HLA-DRA HLA-DRB1 HLA-DQB2 TNXB LOC101929163 BTNL2
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss PPT2-EGFL8 AGPAT1 C2 C4A EGFL8 C4B C2-AS1 GPSM3 PBX2 FKBPL TNXA CFB PRRT1 NOTCH4 PPT2 LOC100507547 RNF5 NELFE MIR6833 AGER ATF6B CYP21A2 STK19 CYP21A1P SKIV2L MIR6721 MIR1236 DXO TNXB
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion SAPCD1-AS1 VARS ABHD16A SLC44A4 C4B BAG6 LTA LY6G6F CLIC1 C2-AS1 GPSM3 MICB C6orf48 LY6G6C FKBPL LY6G6D TNXA CFB NEU1 ZBTB12 MIR6832 LSM2 C6orf47 TNF MSH5 HCP5 PPT2 C6orf10 MIR4646 APOM HLA-DRB5 LOC100507547 RNF5 DDX39B-AS1 SNORD117 AGER CYP21A2 STK19 HLA-DRB6 SKIV2L MIR6721 LY6G5C MIR1236 DXO HLA-DRB1 TNXB LY6G6E LOC100287329 SNORD52 BTNL2 LTB MSH5-SAPCD1 PPT2-EGFL8 AGPAT1 C2 C4A ATP6V1G2-DDX39B EGFL8 SAPCD1 SNORA38 LY6G5B GPANK1 PRRC2A PBX2 HSPA1B NFKBIL1 MCCD1 C6orf25 VWA7 SNORD84 HCG23 LST1 SNORD48 HSPA1A PRRT1 EHMT2 ATP6V1G2 NOTCH4 NCR3 NELFE LOC102725068 MIR6833 AIF1 ATF6B CYP21A1P HSPA1L DDAH2 HLA-DRA CSNK2B DDX39B LOC101929163 HCG26
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SAPCD1-AS1 HLA-DQB1-AS1 ABHD16A C4B BAG6 LTA COL11A2 GPSM3 RGL2 MIR6873 MICB C6orf48 HCG25 BRD2 FKBPL LY6G6D CFB NEU1 LSM2 TAP1 PPT2 C6orf10 LOC100507547 DDX39B-AS1 SNORD117 AGER CYP21A2 STK19 SKIV2L HLA-DQA2 CUTA MIR6721 LY6G5C MIR1236 DXO LY6G6E SNORD52 BTNL2 TAP2 MSH5-SAPCD1 PPT2-EGFL8 C2 C4A PPP1R2P1 ATP6V1G2-DDX39B EGFL8 SNORA38 PRRC2A PBX2 HSPA1B MCCD1 ZBTB22 DAXX LST1 LOC100294145 B3GALT4 HCG24 NELFE LOC102725068 HLA-DMA MIR6833 HLA-DOB SYNGAP1 AIF1 ATF6B HSPA1L TAPBP MIR219A1 DDX39B HLA-DQB2 HCG26 VARS SLC44A4 PHF1 LY6G6F CLIC1 PFDN6 C2-AS1 LY6G6C TNXA ZBTB12 MIR6832 C6orf47 RPS18 TNF PSMB8-AS1 MSH5 HCP5 HLA-DOA MIR4646 APOM HLA-DRB5 ZBTB9 RNF5 KIFC1 PSMB8 HLA-DRB6 HSD17B8 HLA-DQA1 MIR6834 HLA-DRB1 TNXB LOC100287329 PSMB9 LTB RING1 AGPAT1 VPS52 HLA-DPB1 SAPCD1 MIR3135B LY6G5B GPANK1 NFKBIL1 HLA-DPA1 C6orf25 VWA7 SNORD84 HCG23 SNORD48 MIR5004 HSPA1A PRRT1 EHMT2 ATP6V1G2 NOTCH4 NCR3 HLA-DMB CYP21A1P RXRB DDAH2 HLA-DQB1 HLA-DRA SLC39A7 CSNK2B LOC101929163 HLA-DPB2 WDR46
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PPT2-EGFL8 AGPAT1 LOC100507547 RNF5 EGFL8 MIR6833 AGER ATF6B GPSM3 PBX2 MIR6721 FKBPL TNXB PRRT1 NOTCH4 PPT2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SAPCD1-AS1 HLA-DQB1-AS1 ABHD16A C4B BAG6 LTA COL11A2 GPSM3 RGL2 MIR6873 MICB C6orf48 HCG25 BRD2 FKBPL LY6G6D CFB NEU1 LSM2 TAP1 PPT2 C6orf10 LOC100507547 DDX39B-AS1 SNORD117 AGER CYP21A2 STK19 SKIV2L HLA-DQA2 CUTA MIR6721 LY6G5C MIR1236 DXO LY6G6E SNORD52 BTNL2 TAP2 MSH5-SAPCD1 PPT2-EGFL8 C2 C4A PPP1R2P1 ATP6V1G2-DDX39B EGFL8 SNORA38 PRRC2A PBX2 HSPA1B MCCD1 ZBTB22 DAXX LST1 LOC100294145 B3GALT4 HCG24 NELFE LOC102725068 HLA-DMA MIR6833 HLA-DOB SYNGAP1 AIF1 ATF6B HSPA1L TAPBP MIR219A1 DDX39B HLA-DQB2 HCG26 VARS SLC44A4 PHF1 LY6G6F CLIC1 PFDN6 C2-AS1 LY6G6C TNXA ZBTB12 MIR6832 C6orf47 RPS18 TNF PSMB8-AS1 MSH5 HCP5 HLA-DOA MIR4646 APOM HLA-DRB5 ZBTB9 RNF5 KIFC1 PSMB8 HLA-DRB6 HSD17B8 HLA-DQA1 MIR6834 HLA-DRB1 TNXB LOC100287329 PSMB9 LTB RING1 AGPAT1 VPS52 HLA-DPB1 SAPCD1 MIR3135B LY6G5B GPANK1 NFKBIL1 HLA-DPA1 C6orf25 VWA7 SNORD84 HCG23 SNORD48 MIR5004 HSPA1A PRRT1 EHMT2 ATP6V1G2 NOTCH4 NCR3 HLA-DMB CYP21A1P RXRB DDAH2 HLA-DQB1 HLA-DRA SLC39A7 CSNK2B LOC101929163 HLA-DPB2 WDR46
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MIR6891 SAPCD1-AS1 VARS ABHD16A SLC44A4 C4B BAG6 LTA LY6G6F CLIC1 C2-AS1 GPSM3 HLA-B MICB C6orf48 LY6G6C FKBPL LY6G6D TNXA CFB NEU1 ZBTB12 MIR6832 LSM2 C6orf47 TNF MSH5 HCP5 PPT2 C6orf10 MIR4646 APOM LOC100507547 RNF5 DDX39B-AS1 SNORD117 AGER CYP21A2 STK19 SKIV2L MIR6721 LY6G5C MIR1236 DXO TNXB LY6G6E LOC100287329 SNORD52 BTNL2 LTB MSH5-SAPCD1 PPT2-EGFL8 AGPAT1 C2 C4A ATP6V1G2-DDX39B EGFL8 SAPCD1 SNORA38 LY6G5B GPANK1 PRRC2A PBX2 HSPA1B NFKBIL1 MCCD1 C6orf25 VWA7 SNORD84 HCG23 LST1 SNORD48 HSPA1A PRRT1 EHMT2 ATP6V1G2 NOTCH4 NCR3 NELFE LOC102725068 MIR6833 AIF1 ATF6B CYP21A1P HSPA1L DDAH2 HLA-DRA CSNK2B DDX39B LOC101929163 HCG26 MICA

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