Hs02143110_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88743751 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1	2	884
	AK097767.1	2	884	BAC05165.1
	BC111769.1	1	931	AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	ZNF778 LOC101927793 MIR4722 LOC107987238 PIEZO1 CTU2 SLC22A31 CDH15 LOC400558 GALNS TRAPPC2L PABPN1L LINC00304 APRT CBFA2T3 CDT1 LOC100129697 LOC339059 LOC105371409 ACSF3 LOC100289580
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	SNAI3 SNAI3-AS1 MIR4722 MVD PIEZO1 CTU2 RNF166 CYBA LOC339059 LOC100289580
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	MIR4722 PIEZO1 CTU2 RNF166 LOC339059 LOC100289580
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	APRT SNAI3 SNAI3-AS1 MIR4722 CDT1 LOC107987238 PIEZO1 CTU2 RNF166 GALNS LOC339059 LOC100289580
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	MIR4722 PIEZO1 CTU2 LOC339059 LOC100289580
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	SNAI3 SNAI3-AS1 MIR4722 PIEZO1 CTU2 RNF166 LOC339059 LOC100289580
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	ZNF778 LOC101927793 ANKRD11 LOC107987238 PIEZO1 SLC22A31 CDH15 LOC400558 GALNS TRAPPC2L PABPN1L LOC100287036 LINC00304 APRT CBFA2T3 CDT1 LOC100129697 LOC339059 LOC105371409 LOC105371414 ACSF3 LOC100289580
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	SNAI3-AS1 MIR4722 MVD PIEZO1 CTU2 CYBA IL17C MIR5189 ZFPM1 ZC3H18-AS1 SNAI3 RNF166 LOC107984862 LOC339059 ZC3H18 ZNF469 LOC100289580
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	SPATA2L LOC101927793 SNAI3-AS1 MIR4722 ANKRD11 LOC107987238 SLC22A31 GAS8 IL17C CDH15 FANCA APRT SNORD68 CHMP1A CENPBD1 SPATA33 TUBB3 GAS8-AS1 RPL13 LOC100289580 VPS9D1 PIEZO1 CPNE7 PRDM7 CYBA CDK10 GALNS VPS9D1-AS1 LINC00304 MC1R LOC105371409 LOC105371414 AFG3L1P DBNDD1 ACSF3 ZNF778 MVD CTU2 SPIRE2 TUBB8P7 PABPN1L DEF8 SNAI3 LOC105371419 TCF25 CDT1 RNF166 ZNF276 FAM157C LOC101927817 LOC400558 DPEP1 TRAPPC2L LOC100287036 LOC107984817 CBFA2T3 LOC100129697 LOC339059 SPG7 URAHP
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	MIR4722 PIEZO1 CTU2 LOC339059 LOC100289580
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	LOC101927793 MIR4722 LOC107987238 PIEZO1 CTU2 GALNS TRAPPC2L PABPN1L APRT CBFA2T3 CDT1 LOC100129697 LOC339059 LOC105371409 LOC100289580

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity