Hs02143110_cn

• Gene Symbol: LOC339059
• Assay Reference Genome Location: Chr.16:88743751 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 339059
• Gene Name: uncharacterized LOC339059
• Gene Aliases: -
• Location: Chr.16:88742767-88745748 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC339059	NR_120387.1	2	884
	AK097767.1	2	884	BAC05165.1
	BC111769.1	1	931	AAI11770.1

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	HY165228.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC100129697 LOC400558 APRT PABPN1L PIEZO1 GALNS SLC22A31 LINC00304 LOC101927793 MIR4722 CBFA2T3 ACSF3 LOC339059 LOC107987238 TRAPPC2L LOC105371409 CDT1 CTU2 CDH15 LOC100289580 ZNF778
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	MIR4722 LOC339059 CTU2 PIEZO1 LOC100289580 RNF166
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	MIR4722 SNAI3-AS1 LOC339059 SNAI3 CTU2 PIEZO1 CYBA LOC100289580 MVD RNF166
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	MIR4722 SNAI3-AS1 APRT LOC339059 SNAI3 LOC107987238 CDT1 CTU2 PIEZO1 GALNS LOC100289580 RNF166
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	MIR4722 LOC339059 CTU2 PIEZO1 LOC100289580
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	MIR4722 SNAI3-AS1 LOC339059 SNAI3 CTU2 PIEZO1 LOC100289580 RNF166
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC100129697 LOC400558 LOC100287036 APRT PABPN1L PIEZO1 GALNS SLC22A31 LINC00304 LOC101927793 LOC105371414 ANKRD11 CBFA2T3 ACSF3 LOC339059 LOC107987238 TRAPPC2L LOC105371409 CDT1 CDH15 LOC100289580 ZNF778
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	LOC107984862 SNAI3-AS1 ZNF469 PIEZO1 ZC3H18 CYBA RNF166 ZC3H18-AS1 MIR4722 IL17C LOC339059 SNAI3 MIR5189 ZFPM1 CTU2 LOC100289580 MVD
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	MIR4722 LOC339059 CTU2 PIEZO1 LOC100289580
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	FANCA SPIRE2 GALNS CYBA LOC105371414 FAM157C RNF166 AFG3L1P CPNE7 MIR4722 ACSF3 TUBB3 CDH15 LOC400558 LOC100287036 LOC105371419 URAHP SLC22A31 CENPBD1 IL17C LOC105371409 MC1R TUBB8P7 ZNF778 SNAI3-AS1 APRT SPATA2L PABPN1L VPS9D1 ANKRD11 ZNF276 SPG7 LOC339059 CDT1 LOC100289580 GAS8 LOC107984817 LOC100129697 CHMP1A RPL13 PIEZO1 SPATA33 LINC00304 LOC101927793 DEF8 PRDM7 CDK10 LOC101927817 CBFA2T3 SNAI3 DPEP1 GAS8-AS1 SNORD68 LOC107987238 TRAPPC2L CTU2 MVD DBNDD1 TCF25 VPS9D1-AS1
dgv3065n100	Chr.16:88711587 - 88927172 on Build GRCh38	Gain	APRT PABPN1L PIEZO1 GALNS LOC101927793 MIR4722 CBFA2T3 LOC339059 LOC107987238 TRAPPC2L CDT1 CTU2 LOC100289580

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity