Hs02151806_cn

• Gene Symbol: LOC100289580
• Assay Reference Genome Location: Chr.16:88740336 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 100289580
• Gene Name: uncharacterized LOC100289580
• Gene Aliases: -
• Location: Chr.16:88731180-88741425 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC100289580	NR_103774.1	3	2687
	AK127064.1	2	3439

Target Gene Details

• Entrez Gene ID: 9780
• Gene Name: piezo type mechanosensitive ion channel component 1
• Gene Aliases: DHS, FAM38A, LMPH3, Mib
• Location: Chr.16:88715338-88785220 on Build GRCh38
• Assay Gene Location: Within Intron 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PIEZO1	NM_001142864.3			NP_001136336.2
	DR731297.1
	KC602455.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC339059 LOC100289580 LOC100129697 TRAPPC2L LOC107987238 ACSF3 CBFA2T3 MIR4722 LOC105371409 GALNS LOC101927793 APRT LINC00304 PABPN1L LOC400558 SLC22A31 ZNF778 CTU2 PIEZO1 CDT1 CDH15
nsv471113	Chr.16:88650665 - 88764428 on Build GRCh38	Loss	SNAI3-AS1 LOC339059 LOC100289580 SNAI3 CTU2 PIEZO1 MIR4722 CYBA RNF166 MVD
nsv471114	Chr.16:88688461 - 88756339 on Build GRCh38	Gain	LOC339059 LOC100289580 CTU2 PIEZO1 MIR4722 RNF166
dgv3064n100	Chr.16:88683753 - 88846491 on Build GRCh38	Gain	SNAI3-AS1 LOC339059 LOC100289580 APRT SNAI3 LOC107987238 CTU2 PIEZO1 CDT1 MIR4722 RNF166 GALNS
nsv517643	Chr.16:88713767 - 88756339 on Build GRCh38	Loss	LOC339059 LOC100289580 CTU2 PIEZO1 MIR4722
nsv833327	Chr.16:88667431 - 88757621 on Build GRCh38	Loss	SNAI3-AS1 LOC339059 LOC100289580 SNAI3 CTU2 PIEZO1 MIR4722 RNF166
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC339059 LOC100289580 LOC100129697 TRAPPC2L LOC105371414 LOC107987238 ACSF3 CBFA2T3 ANKRD11 LOC105371409 GALNS LOC101927793 APRT LINC00304 PABPN1L LOC400558 SLC22A31 ZNF778 LOC100287036 PIEZO1 CDT1 CDH15
nsv952070	Chr.16:88257295 - 88780192 on Build GRCh38	Deletion	SNAI3-AS1 LOC339059 LOC100289580 LOC107984862 IL17C ZC3H18 SNAI3 ZFPM1 ZC3H18-AS1 MIR4722 RNF166 MVD ZNF469 MIR5189 CTU2 PIEZO1 CYBA
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	TUBB3 DPEP1 LOC100289580 CHMP1A ACSF3 MIR4722 GALNS MC1R DBNDD1 PABPN1L LOC400558 ZNF778 CTU2 ZNF276 GAS8-AS1 LOC101927817 IL17C LOC100129697 VPS9D1 SPIRE2 LOC105371414 CBFA2T3 CDK10 ANKRD11 LOC105371409 TUBB8P7 LINC00304 SNORD68 LOC100287036 CPNE7 TRAPPC2L SNAI3 LOC107984817 RNF166 LOC101927793 APRT VPS9D1-AS1 CENPBD1 SPATA2L PIEZO1 SPATA33 PRDM7 SNAI3-AS1 GAS8 LOC339059 URAHP FAM157C LOC105371419 LOC107987238 SPG7 AFG3L1P MVD DEF8 TCF25 FANCA SLC22A31 RPL13 CDT1 CYBA CDH15
nsv1160442	Chr.16:88708161 - 88778524 on Build GRCh38	Deletion	LOC339059 LOC100289580 CTU2 PIEZO1 MIR4722
nsv1927	Chr.16:88712585 - 88743583 on Build GRCh38	Insertion	LOC339059 LOC100289580 CTU2 PIEZO1 MIR4722
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	LOC339059 LOC100289580 LOC100129697 TRAPPC2L LOC107987238 CBFA2T3 MIR4722 LOC105371409 GALNS LOC101927793 APRT PABPN1L CTU2 PIEZO1 CDT1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cation transport
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
cation transmembrane transport

Function(s)

cation channel activity
mechanically-gated ion channel activity