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Gene Symbol
B3GNTL1
Assay Reference Genome
Location

Chr.17:82943081 on build GRCh38
Cytoband
17q25.3
Assay ID Hs02156742_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 146712

Gene Name:

 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1

Gene Aliases:

 3-Gn-T8, B3GNT8, BGnT-8, beta-1, beta3Gn-T8, beta3GnTL1

Location:

 Chr.17:82942149-83051845 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
B3GNTL1 NM_001009905.2 13 2093 NP_001009905.1
NM_001320742.1 14 2211 NP_001307671.1
NM_001320743.1 9 2688 NP_001307672.1
NR_135465.1 14 2448
NR_135466.1
AK054757.1

Target Gene Details

Entrez Gene ID:

 6904

Gene Name:

 tubulin folding cofactor D

Gene Aliases:

 SSD-1, tfcD

Location:

 Chr.17:82752048-82943186 on Build GRCh38

Assay Gene Location:

 Within Exon 56
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TBCD NM_005993.4 39 4327 NP_005984.3
XM_005256399.4 27 3124 XP_005256456.1
XM_005256404.4 27 3166 XP_005256461.1
XM_006722290.2 38 4224 XP_006722353.1
XM_006722291.3 27 3448 XP_006722354.1
XM_006722292.2 25 2860 XP_006722355.1
XM_011523589.1 34 3867 XP_011521891.1
XM_011523590.1 34 3948 XP_011521892.1
XM_011523591.1 34 3852 XP_011521893.1
XM_011523593.1 33 3459 XP_011521895.1
XM_011523594.1 26 2929 XP_011521896.1
XM_011523595.2 26 3007 XP_011521897.1
XM_011523597.2 24 3660 XP_011521899.1
XM_011523598.1 24 2718 XP_011521900.1
XM_011523599.2 24 3436 XP_011521901.1
XM_011523600.2 25 2880 XP_011521902.1
XM_017024989.1 23 2574 XP_016880478.1
XM_017024990.1 27 2946 XP_016880479.1
AK057975.1 20 2205
BC012824.2 12 1784 AAH12824.2
BG254219.1 1 294

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1067553 Chr.17:82530808 - 83091923 on Build GRCh38 Loss LOC101929552 FN3K LOC105371944 ZNF750 B3GNTL1 METRNL WDR45B MIR4525 FOXK2 RAB40B FN3KRP TBCD LOC105376791
dgv3296n100 Chr.17:82851564 - 83091923 on Build GRCh38 Gain B3GNTL1 LOC105371944 METRNL TBCD
nsv428351 Chr.17:81152631 - 83064073 on Build GRCh38 Gain GPS1 SNORD134 FN3K LOC101929511 MAFG-AS1 OXLD1 LRRC45 SLC25A10 FASN AATK SIRT7 GCGR RAC3 ZNF750 ARHGDIA P4HB LOC105371925 MIR4740 ARL16 TSPAN10 MIR6786 TMEM105 PDE6G TBCD UTS2R NPB OGFOD3 RFNG NARF ALYREF MIR3186 SLC38A10 MIR6787 B3GNTL1 WDR45B FOXK2 MAFG PCYT2 LINC00482 CCDC137 CD7 HEXDC ACTG1 DCXR MYADML2 PYCR1 MRPL12 FAAP100 HGS MIR4525 PPP1R27 RAB40B FN3KRP NOTUM MCRIP1 LOC101929552 C17orf89 DUS1L ASPSCR1 STRA13 LOC105371944 NPLOC4 CCDC57 SLC16A3 LOC105376790 SECTM1 ANAPC11 CEP131 FSCN2 BAHCC1 AATK-AS1 TEPSIN TEX19 C17orf62 CSNK1D LOC100130370 LOC105376791
nsv576217 Chr.17:82937869 - 82960820 on Build GRCh38 Loss B3GNTL1 LOC105371944 TBCD
dgv3297n100 Chr.17:82879855 - 83048753 on Build GRCh38 Gain B3GNTL1 LOC105371944 TBCD
nsv1057153 Chr.17:82876571 - 83091923 on Build GRCh38 Loss B3GNTL1 LOC105371944 METRNL TBCD
esv3893052 Chr.17:82895301 - 83102003 on Build GRCh38 Gain B3GNTL1 LOC105371944 METRNL TBCD
esv21913 Chr.17:81828123 - 83103548 on Build GRCh38 Gain+Loss GPS1 SNORD134 FN3K LOC101929511 MAFG-AS1 LRRC45 FASN SIRT7 RAC3 ZNF750 ARHGDIA P4HB METRNL TBCD UTS2R NPB OGFOD3 RFNG NARF ALYREF MIR6787 B3GNTL1 WDR45B FOXK2 MAFG PCYT2 CD7 HEXDC DCXR MYADML2 PYCR1 MIR4525 PPP1R27 RAB40B FN3KRP NOTUM MCRIP1 LOC101929552 DUS1L ASPSCR1 STRA13 LOC105371944 CCDC57 SLC16A3 LOC105376790 SECTM1 ANAPC11 TEX19 C17orf62 CSNK1D LOC105376791

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