Hs02167331_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140856487 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56139
• Gene Name: protocadherin alpha 10
• Gene Aliases: CNR8, CNRN8, CNRS8, CRNR8, PCDH-ALPHA10
• Location: Chr.5:140855883-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA10	NM_018901.3	1	605	NP_061724.1
	NM_031859.2	1	605	NP_114065.1
	NM_031860.2	1	605	NP_114066.1
	AF152306.1	1	439	AAD43700.1
	AF152475.1	1	439	AAD43736.1
	AF169689.1	1	439	AAF89329.1
	BC130447.1	1	478
	DA503193.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_031857.1			NP_114063.1
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
dgv10102n54	Chr.5:140851652 - 140857963 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHB3 PCDHGA8 PCDHA7 PCDHGB4 PCDHB5 PCDHGB2 PCDHB19P PCDHA6 PCDHB17P PCDHB15 PCDHB4 PCDHGA1 PCDHGA7 PCDHB11 PCDHA5 PCDHB2 PCDHAC1 PCDHB9 PCDHGA10 PCDHGA6 PCDHGB1 PCDHGA12 PCDHA8 PCDHGB7 PCDHB13 TAF7 PCDHGA9 PCDHGB3 PCDHGB6 PCDHB10 PCDHA10 PCDHGA3 PCDHGB8P PCDHGA4 SLC25A2 PCDHB18P PCDHAC2 PCDHB16 PCDHB8 LOC101926905 PCDHA13 PCDHA9 PCDHA11 PCDHA3 PCDHGA11 PCDHA12 PCDHA4 PCDHB7 PCDHB6 PCDHGA5 PCDHGA2 PCDHA1 PCDHA2 PCDHB1 PCDHB12 PCDHGB5 PCDHB14
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA11 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA11 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
nsv599894	Chr.5:140852761 - 140864165 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
dgv10104n54	Chr.5:140853365 - 140856743 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
nsv599902	Chr.5:140855278 - 140856743 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	HARS2 PCDHA7 PCDHA5 PCDHA9 PCDHA11 PCDHA3 VTRNA1-3 ZMAT2 PCDHA4 PCDHA6 HARS PCDHA10 VTRNA1-2 PCDHA1 PCDHA8 PCDHA2 VTRNA1-1
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6
nsv964954	Chr.5:140856140 - 140858351 on Build GRCh38	Duplication	PCDHA10 PCDHA7 PCDHA5 PCDHA9 PCDHA3 PCDHA1 PCDHA8 PCDHA2 PCDHA4 PCDHA6

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding