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Gene Symbol
TRAPPC2L
Assay Reference Genome
Location

Chr.16:88857179 on build GRCh38
Cytoband
16q24.3
Assay ID Hs02186768_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51693

Gene Name:

 trafficking protein particle complex 2-like

Gene Aliases:

 HSPC176

Location:

 Chr.16:88856220-88862686 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 2 - Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRAPPC2L NM_001318524.1 NP_001305453.1
NM_001318525.1 NP_001305454.1
NM_001318526.1 NP_001305455.1
NM_001318527.1 NP_001305456.1
NM_001318528.1 NP_001305457.1
NM_001318529.1 NP_001305458.1
NM_001318530.1 NP_001305459.1
NM_001318532.1 NP_001305461.1
NM_016209.4 NP_057293.1
NR_134670.1
NR_134671.1
XM_017023270.1 XP_016878759.1
AF089106.1 AAF00568.1
AF161524.1 AAF29139.1
AK126779.1 BAC86686.1
AK307253.1
AK310805.1
AK311885.1
AX771012.1 CAE01175.1
AX771013.1 CAE01176.1
AX771014.1 CAE01177.1
BC011369.1 AAH11369.1
BC018024.1 AAH18024.1
BC105809.1 AAI05810.1
BG283878.1
BI754306.1
BX340702.2
BX384775.2
BX419849.2
DA209193.1
DA293122.1
DA295904.1
DA833474.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv37n68 Chr.16:88767460 - 88944903 on Build GRCh38 Loss LOC100129697 LOC105371409 PIEZO1 LOC107987238 APRT TRAPPC2L CDT1 GALNS PABPN1L LOC101927793 CBFA2T3
nsv1063024 Chr.16:88707330 - 89238482 on Build GRCh38 Gain SLC22A31 LOC100129697 CDH15 PIEZO1 LOC400558 LOC107987238 APRT TRAPPC2L CDT1 GALNS CBFA2T3 LOC105371409 LINC00304 ZNF778 ACSF3 LOC100289580 CTU2 MIR4722 PABPN1L LOC101927793 LOC339059
nsv471115 Chr.16:88801844 - 89197442 on Build GRCh38 Loss SLC22A31 LOC100129697 CDH15 LOC400558 LOC107987238 APRT TRAPPC2L CDT1 GALNS CBFA2T3 LOC105371409 LINC00304 ACSF3 PABPN1L LOC101927793
nsv573674 Chr.16:88738775 - 89325907 on Build GRCh38 Gain SLC22A31 LOC100129697 LOC100287036 CDH15 PIEZO1 LOC400558 LOC107987238 APRT TRAPPC2L CDT1 LOC105371414 GALNS CBFA2T3 LOC105371409 LINC00304 ZNF778 ACSF3 LOC100289580 ANKRD11 PABPN1L LOC101927793 LOC339059
esv3639555 Chr.16:88745961 - 88899576 on Build GRCh38 Gain PIEZO1 LOC107987238 APRT TRAPPC2L CDT1 GALNS PABPN1L LOC101927793 CBFA2T3
nsv952071 Chr.16:88790893 - 89019992 on Build GRCh38 Deletion LOC100129697 LOC105371409 LOC107987238 APRT TRAPPC2L CDT1 GALNS PABPN1L LOC101927793 CBFA2T3
nsv521217 Chr.16:88805821 - 89174375 on Build GRCh38 Loss LOC100129697 CDH15 LOC400558 LOC107987238 APRT TRAPPC2L CDT1 GALNS CBFA2T3 LOC105371409 LINC00304 ACSF3 PABPN1L LOC101927793
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC100287036 DPEP1 SNORD68 GAS8-AS1 MC1R LOC107987238 FANCA CDT1 GALNS CDK10 TCF25 ZNF778 CTU2 MIR4722 SPIRE2 LOC339059 DBNDD1 RPL13 CENPBD1 LOC400558 APRT SNAI3 VPS9D1-AS1 TRAPPC2L SNAI3-AS1 LOC107984817 LOC105371414 FAM157C ACSF3 LOC100289580 SPATA33 MVD PABPN1L SLC22A31 LOC100129697 AFG3L1P PRDM7 CPNE7 VPS9D1 CBFA2T3 TUBB8P7 LOC105371409 CYBA URAHP LOC105371419 ZNF276 CDH15 PIEZO1 DEF8 GAS8 LINC00304 SPG7 ANKRD11 CHMP1A IL17C RNF166 TUBB3 SPATA2L LOC101927793 LOC101927817
esv3639561 Chr.16:88837996 - 88882065 on Build GRCh38 Gain TRAPPC2L GALNS PABPN1L CBFA2T3
nsv1061256 Chr.16:88711587 - 89013365 on Build GRCh38 Gain LOC100129697 PIEZO1 LOC107987238 APRT TRAPPC2L CDT1 GALNS CBFA2T3 LOC105371409 LOC100289580 CTU2 MIR4722 PABPN1L LOC101927793 LOC339059
nsv1063441 Chr.16:88767066 - 88861882 on Build GRCh38 Loss PIEZO1 LOC107987238 APRT TRAPPC2L CDT1 GALNS

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein

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