Hs02238551_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:842856 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	AK291089.1
	BF530006.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	PNPLA2 CRACR2B SLC25A22 SNORA52 PDDC1 PIDD1 CHID1 LOC171391 AP2A2 RPLP2 CEND1 CD151 POLR2L TSPAN4 PANO1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	DEAF1 PNPLA2 IRF7 PHRF1 HRAS SLC25A22 SNORA52 RNH1 RASSF7 PDDC1 PIDD1 LOC143666 LOC101059906 MIR6744 MIR210 LOC171391 RPLP2 TALDO1 POLR2L PANO1 MUC5AC PTDSS2 CRACR2B CDHR5 TOLLIP-AS1 LRRC56 MUC6 LMNTD2 TMEM80 DRD4 SCT CHID1 TOLLIP MUC5B AP2A2 MUC2 CEND1 CD151 ANO9 TSPAN4 EPS8L2 MIR210HG SIGIRR LOC101927503
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	CHID1 POLR2L TSPAN4
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	POLR2L TSPAN4
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	DEAF1 PNPLA2 IRF7 PHRF1 HRAS SLC25A22 SNORA52 RNH1 RASSF7 PDDC1 PIDD1 LOC143666 LOC101059906 MIR210 LOC171391 RPLP2 TALDO1 POLR2L B4GALNT4 PANO1 PTDSS2 CRACR2B CDHR5 LRRC56 LMNTD2 TMEM80 PKP3 DRD4 SCT CHID1 AP2A2 CEND1 CD151 ANO9 TSPAN4 EPS8L2 MIR210HG SIGIRR
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	DEAF1 PNPLA2 IRF7 PHRF1 HRAS SLC25A22 SNORA52 RNH1 RASSF7 PDDC1 PIDD1 LOC143666 LOC101059906 MIR210 LOC171391 RPLP2 TALDO1 POLR2L PANO1 PTDSS2 CRACR2B CDHR5 LRRC56 LMNTD2 TMEM80 DRD4 SCT CHID1 CEND1 CD151 TSPAN4 EPS8L2 MIR210HG
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PNPLA2 CRACR2B SLC25A22 SNORA52 PDDC1 PIDD1 CHID1 LOC171391 RPLP2 CEND1 CD151 POLR2L TSPAN4 PANO1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	DEAF1 PNPLA2 IRF7 PHRF1 HRAS SLC25A22 SNORA52 RNH1 RASSF7 PDDC1 PIDD1 LOC143666 LOC101059906 MIR6744 MIR210 LOC171391 RPLP2 TALDO1 POLR2L B4GALNT4 PANO1 MUC5AC PTDSS2 CRACR2B CDHR5 LRRC56 MUC6 LMNTD2 TMEM80 PKP3 DRD4 SCT CHID1 TOLLIP MUC5B AP2A2 MUC2 CEND1 CD151 ANO9 TSPAN4 EPS8L2 MIR210HG SIGIRR LOC101927503
dgv1526n54	Chr.11:812533 - 843713 on Build GRCh38	Gain	PNPLA2 CRACR2B RPLP2 CD151 POLR2L TSPAN4
nsv552874	Chr.11:823590 - 843713 on Build GRCh38	Gain	PNPLA2 CRACR2B CD151 POLR2L TSPAN4
nsv552888	Chr.11:841959 - 846738 on Build GRCh38	Loss	POLR2L TSPAN4
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	CHID1 PNPLA2 CRACR2B AP2A2 RPLP2 CD151 POLR2L SNORA52 TSPAN4 PIDD1
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PNPLA2 CRACR2B SLC25A22 SNORA52 PDDC1 PIDD1 CHID1 LOC171391 RPLP2 CEND1 CD151 POLR2L TSPAN4 PANO1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	CHID1 PNPLA2 CRACR2B CD151 POLR2L TSPAN4
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PNPLA2 CRACR2B SLC25A22 SNORA52 PDDC1 PIDD1 CHID1 LOC171391 RPLP2 TALDO1 CEND1 CD151 POLR2L TSPAN4 PANO1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding