Hs02238551_cn

• Gene Symbol: TSPAN4
• Assay Reference Genome Location: Chr.11:842856 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 7106
• Gene Name: tetraspanin 4
• Gene Aliases: NAG-2, NAG2, TETRASPAN, TM4SF7, TSPAN-4
• Location: Chr.11:842824-867116 on Build GRCh38
• Assay Gene Location: Overlaps - Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TSPAN4	NM_001025238.1			NP_001020409.1
	NM_001025239.1			NP_001020410.1
	NM_003271.4			NP_003262.1
	AK291089.1
	BF530006.1
	BM755435.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv1013n100	Chr.11:772982 - 933569 on Build GRCh38	Gain	PNPLA2 TSPAN4 POLR2L SLC25A22 CRACR2B CD151 SNORA52 LOC171391 RPLP2 PDDC1 PIDD1 PANO1 CEND1 AP2A2 CHID1
nsv552887	Chr.11:841284 - 876755 on Build GRCh38	Loss	TSPAN4 POLR2L CHID1
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	LOC143666 PNPLA2 SCT TSPAN4 POLR2L SLC25A22 MUC2 MIR6744 PTDSS2 LMNTD2 TMEM80 TOLLIP MUC6 CD151 LOC171391 LOC101059906 IRF7 CDHR5 DEAF1 DRD4 PANO1 TALDO1 AP2A2 MIR210HG MUC5B RASSF7 EPS8L2 CRACR2B SNORA52 RPLP2 HRAS LRRC56 MUC5AC MIR210 PDDC1 PIDD1 ANO9 PHRF1 SIGIRR CEND1 CHID1 TOLLIP-AS1 LOC101927503 RNH1
nsv8760	Chr.11:840951 - 852059 on Build GRCh38	Loss	TSPAN4 POLR2L
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	LOC143666 PNPLA2 SCT TSPAN4 POLR2L SLC25A22 PTDSS2 LMNTD2 TMEM80 CD151 LOC171391 LOC101059906 IRF7 CDHR5 B4GALNT4 DEAF1 DRD4 PANO1 PKP3 TALDO1 AP2A2 MIR210HG RASSF7 EPS8L2 CRACR2B SNORA52 RPLP2 HRAS LRRC56 MIR210 PDDC1 PIDD1 ANO9 PHRF1 SIGIRR CEND1 CHID1 RNH1
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	LOC143666 PNPLA2 SCT TSPAN4 POLR2L SLC25A22 PTDSS2 LMNTD2 TMEM80 CD151 LOC171391 LOC101059906 IRF7 CDHR5 DEAF1 DRD4 PANO1 TALDO1 MIR210HG RASSF7 EPS8L2 CRACR2B SNORA52 RPLP2 HRAS LRRC56 MIR210 PDDC1 PIDD1 PHRF1 CEND1 CHID1 RNH1
nsv552871	Chr.11:766479 - 870446 on Build GRCh38	Loss	PNPLA2 TSPAN4 POLR2L SLC25A22 CRACR2B CD151 SNORA52 LOC171391 RPLP2 PDDC1 PIDD1 PANO1 CEND1 CHID1
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	LOC143666 PNPLA2 SCT TSPAN4 POLR2L SLC25A22 MUC2 MIR6744 PTDSS2 LMNTD2 TMEM80 TOLLIP MUC6 CD151 LOC171391 LOC101059906 IRF7 CDHR5 B4GALNT4 DEAF1 DRD4 PANO1 PKP3 TALDO1 AP2A2 MIR210HG MUC5B RASSF7 EPS8L2 CRACR2B SNORA52 RPLP2 HRAS LRRC56 MUC5AC MIR210 PDDC1 PIDD1 ANO9 PHRF1 SIGIRR CEND1 CHID1 LOC101927503 RNH1
dgv1526n54	Chr.11:812533 - 843713 on Build GRCh38	Gain	PNPLA2 TSPAN4 POLR2L CRACR2B CD151 RPLP2
nsv552874	Chr.11:823590 - 843713 on Build GRCh38	Gain	PNPLA2 TSPAN4 POLR2L CRACR2B CD151
nsv552888	Chr.11:841959 - 846738 on Build GRCh38	Loss	TSPAN4 POLR2L
nsv832044	Chr.11:809019 - 938308 on Build GRCh38	Loss	PNPLA2 PIDD1 TSPAN4 POLR2L CRACR2B CD151 SNORA52 RPLP2 AP2A2 CHID1
nsv1040044	Chr.11:776335 - 900929 on Build GRCh38	Gain+Loss	PNPLA2 TSPAN4 POLR2L SLC25A22 CRACR2B CD151 SNORA52 LOC171391 RPLP2 PDDC1 PIDD1 PANO1 CEND1 CHID1
nsv1048774	Chr.11:816471 - 900929 on Build GRCh38	Gain	PNPLA2 TSPAN4 POLR2L CRACR2B CD151 CHID1
nsv951272	Chr.11:751201 - 911500 on Build GRCh38	Deletion	PNPLA2 TSPAN4 POLR2L SLC25A22 CRACR2B CD151 SNORA52 LOC171391 RPLP2 PDDC1 PIDD1 PANO1 TALDO1 CEND1 CHID1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

protein complex assembly
cell surface receptor signaling pathway

Function(s)

antigen binding
integrin binding
protein binding