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See other PDPK1 CNV Assays ›
Gene Symbol
PDPK1
Assay Reference Genome
Location

Chr.16:2599096 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02269501_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 5170

Gene Name:

 3-phosphoinositide dependent protein kinase 1

Gene Aliases:

 PDK1, PDPK2, PDPK2P, PRO0461

Location:

 Chr.16:2537964-2603190 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PDPK1 NM_001261816.1 12 2938 NP_001248745.1
NM_002613.4 14 3149 NP_002604.1
NM_031268.5 11 2768 NP_112558.2
XM_011522521.2 14 6837 XP_011520823.1
XM_011522523.2 11 6461 XP_011520825.1
XM_017023271.1 13 7217 XP_016878760.1
XM_017023272.1 13 3773 XP_016878761.1
XM_017023273.1 13 3482 XP_016878762.1
XM_017023274.1 14 3620 XP_016878763.1
XM_017023275.1 10 6842 XP_016878764.1
XM_017023276.1 10 3086 XP_016878765.1
XM_017023277.1 11 3184 XP_016878766.1
BC033494.1 11 2681 AAH33494.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv33514 Chr.16:2599043 - 2687260 on Build GRCh38 Gain+Loss PDPK1 ERVK13-1 FLJ42627 KCTD5 LOC652276
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication HS3ST6 TRAF7 MIR6768 LOC105371184 MIR1225 MIR6511B1 SSTR5-AS1 CRAMP1 SNORA10 LOC100134368 HBM NTN3 UNKL PIGQ SNORD60 TBC1D24 PDIA2 NARFL DECR2 DDX11L10 MRPS34 CAPN15 SNRNP25 LOC107984876 NME3 NME4 TPSD1 C1QTNF8 BAIAP3 STUB1 C16orf91 ARHGDIG RNPS1 FAM173A LUC7L WDR90 JMJD8 RPS2 NUBP2 LOC652276 PGP MSLN NOXO1 PRR35 SLC9A3R2 NPW RNF151 MIR3176 RPUSD1 KCTD5 CHTF18 PRSS27 ABCA17P WFIKKN1 HBA2 MIR3178 CCNF NTHL1 MIR5587 WASIR2 RHOT2 PRR25 TPSB2 ZNF598 MIR6859-4 LOC105371038 MIR6767 AXIN1 LINC00235 GNPTG MAPK8IP3 MIR3177 TMEM204 MSRB1 TPSAB1 NHLRC4 MIR4717 MEIOB TELO2 MIR940 WDR24 LMF1-AS1 GFER TSC2 PDPK1 POLR3K LINC00254 CEMP1 LOC105371046 DNASE1L2 LOC106660606 TPSG1 ABCA3 PKD1 NPRL3 METTL26 MIR4516 ATP6V0C SSTR5 CCDC154 UBE2I SYNGR3 AMDHD2 MIR662 E4F1 TBL3 SOX8 SNHG19 MPG RAB11FIP3 GNG13 RHBDL1 SNORA64 HBQ1 RPL3L NDUFB10 SNORA78 LOC729652 FAM234A CASKIN1 FAHD1 RAB40C CLCN7 ERVK13-1 HAGH MLST8 FLJ42627 TSR3 RPL23AP5 HAGHL EME2 LOC105371045 MIR3180-5 PTX4 METRN LOC105371049 BRICD5 PRSS29P IFT140 HBZ RGS11 MIR3677 RAB26 CCDC78 LOC105371047 SPSB3 ECI1 TMEM8A FBXL16 LOC100287175 CACNA1H SNHG9 HN1L C16orf59 MRPL28 LMF1 IGFALS RHBDF1 MCRIP2 HBA1 LOC107987233 LOC101929280
esv2760067 Chr.16:2486824 - 2820535 on Build GRCh38 Gain+Loss PDPK1 ERVK13-1 PRSS41 FLJ42627 KCTD5 PRSS27 CEMP1 TCEB2 MIR3178 SRRM2-AS1 ATP6V0C PRSS21 PRSS33 AMDHD2 LOC652276 TBC1D24 SRRM2
dgv2693n100 Chr.16:2593295 - 2676863 on Build GRCh38 Gain PDPK1 ERVK13-1 FLJ42627 LOC652276
esv3637634 Chr.16:2586284 - 2610862 on Build GRCh38 Gain PDPK1 LOC652276
nsv833122 Chr.16:2501717 - 2663937 on Build GRCh38 Loss AMDHD2 PDPK1 ERVK13-1 FLJ42627 LOC652276 CEMP1 MIR3178 TBC1D24 ATP6V0C
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain TRAF7 MLST8 MIR6768 MIR1225 MIR6511B1 MIR3180-5 MIR4717 NTN3 LOC652276 LOC105371049 BRICD5 PGP MIR940 MIR3677 SNORD60 TBC1D24 RAB26 TSC2 PDPK1 ABCA17P CEMP1 DNASE1L2 LOC106660606 ECI1 ABCA3 PKD1 MIR3178 MIR4516 ATP6V0C CCNF AMDHD2 E4F1 SNHG19 C16orf59 LOC729652 RNPS1 CASKIN1 MIR6767
nsv833123 Chr.16:2561247 - 2764988 on Build GRCh38 Gain+Loss PDPK1 ERVK13-1 FLJ42627 KCTD5 PRSS27 LOC652276 SRRM2-AS1 SRRM2
dgv780e212 Chr.16:2595646 - 2700191 on Build GRCh38 Gain PDPK1 ERVK13-1 FLJ42627 KCTD5 LOC652276

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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