Hs02270450_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1788916 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1	8	1306	NP_001271430.1
	NM_001284502.1	6	894	NP_001271431.1
	NM_012225.3	7	1116	NP_036357.1
	NR_104318.1	6	917
	XM_005255027.2	7	1583	XP_005255084.1
	XM_005255030.1	6	854	XP_005255087.1
	XM_011522338.2	6	1051	XP_011520640.1
	XM_017022831.1	7	1250	XP_016878320.1
	XM_017022832.1	6	1384	XP_016878321.1
	AF118394.1	7	1081	AAD45242.1
	AK001023.1	7	1092	BAA91471.1
	AK093593.1	5	1929
	AK300696.1	6	850
	BC002768.2	7	1073	AAH02768.1
	BC008005.1	7	1098	AAH08005.1
	BF439443.1
	BU680530.1	1	293
	BX648907.1	5	1884

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv457335	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	NME3 NUBP2 MAPK8IP3 MRPS34 EME2 SPSB3 MIR3177
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	NHLRC4 LINC00254 C1QTNF8 LOC105371046 WDR24 HBA2 BAIAP3 ABCA17P HAGH TPSAB1 NPW LOC107987233 HBZ LOC105371045 CCDC78 DDX11L10 IGFALS RGS11 DECR2 WFIKKN1 MIR5587 SSTR5 LOC100134368 SNORA64 NME3 UBE2I FAM173A MSRB1 ABCA3 C16orf91 MIR3176 CEMP1 SNHG9 HAGHL CHTF18 RPL3L PGP NTN3 FLJ42627 STUB1 E4F1 RNPS1 SNORD60 TRAF7 GNG13 C16orf59 MIR6768 ATP6V0C LOC101929280 MLST8 MIR6859-4 WDR90 RAB40C TMEM204 LOC106660606 SLC9A3R2 NUBP2 MAPK8IP3 TPSG1 PDPK1 NOXO1 IFT140 BRICD5 PTX4 EME2 KCTD5 MIR3177 CASKIN1 AMDHD2 RPS2 SNORA78 RHBDF1 TPSB2 CACNA1H LOC107984876 RHOT2 RHBDL1 MCRIP2 SYNGR3 LUC7L PDIA2 MRPL28 ECI1 MIR4717 RPL23AP5 LINC00235 NME4 FAHD1 LMF1 PRR25 LOC105371049 HBM RAB26 ARHGDIG MIR6511B1 LOC105371047 MIR1225 ZNF598 LOC652276 SOX8 HBQ1 JMJD8 GFER MIR662 MRPS34 PRSS29P CCDC154 MPG NARFL HS3ST6 TSR3 SNORA10 FAM234A FBXL16 MIR940 SNHG19 RAB11FIP3 TELO2 UNKL LOC105371184 METRN SNRNP25 NPRL3 CLCN7 CCNF SSTR5-AS1 LOC100287175 PKD1 TBL3 TMEM8A LOC729652 WASIR2 MEIOB MSLN ERVK13-1 TBC1D24 PIGQ PRR35 MIR3677 POLR3K MIR3178 HN1L TSC2 TPSD1 GNPTG HBA1 NTHL1 RPUSD1 MIR4516 LMF1-AS1 LOC105371038 CAPN15 PRSS27 NDUFB10 MIR3180-5 DNASE1L2 METTL26 AXIN1 CRAMP1 RNF151 SPSB3 MIR6767
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	NME3 NUBP2 MAPK8IP3 MRPS34 EME2 IGFALS HAGH SPSB3
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	NME3 NUBP2 MAPK8IP3 MRPS34 EME2 IGFALS SPSB3 MIR3177
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	NME3 NUBP2 MAPK8IP3 MRPS34 EME2 IGFALS SPSB3
nsv1042986	Chr.16:1784723 - 1866102 on Build GRCh38	Loss	NUBP2 MEIOB IGFALS HAGH FAHD1
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	NME3 NUBP2 MAPK8IP3 MRPS34 IFT140 HN1L EME2 LOC105371046 HAGH MIR3177 IGFALS CRAMP1 SPSB3
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	NME3 NUBP2 MAPK8IP3 MRPS34 EME2 IGFALS SPSB3
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	NME3 NUBP2 MAPK8IP3 TELO2 MRPS34 IFT140 HN1L EME2 LOC105371046 HAGH MIR3177 FAHD1 MEIOB TMEM204 IGFALS CRAMP1 LOC105371047 SPSB3
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	NME3 NUBP2 MAPK8IP3 MRPS34 EME2 IGFALS SPSB3
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	NME3 NUBP2 MAPK8IP3 MRPS34 HN1L EME2 HAGH MIR3177 FAHD1 MEIOB IGFALS CRAMP1 SPSB3
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	NME3 NUBP2 MAPK8IP3 MRPS34 EME2 IGFALS HAGH SPSB3 MIR3177 FAHD1
nsv571170	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	NME3 NUBP2 MAPK8IP3 MRPS34 EME2 IGFALS SPSB3

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding