Hs02270450_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1788916 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1	8	1306	NP_001271430.1
	NM_001284502.1	6	894	NP_001271431.1
	NM_012225.3	7	1116	NP_036357.1
	NR_104318.1	6	917
	XM_005255027.2	7	1583	XP_005255084.1
	XM_005255030.1	6	854	XP_005255087.1
	XM_011522338.2	6	1051	XP_011520640.1
	XM_017022831.1	7	1250	XP_016878320.1
	XM_017022832.1	6	1384	XP_016878321.1
	AF118394.1	7	1081	AAD45242.1
	AK001023.1	7	1092	BAA91471.1
	AK093593.1	5	1929
	AK300696.1	6	850
	BC002768.2	7	1073	AAH02768.1
	BC008005.1	7	1098	AAH08005.1
	BF439443.1
	BU680530.1	1	293
	BX648907.1	5	1884

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv571169	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	EME2 NUBP2 MIR3177 MAPK8IP3 SPSB3 NME3 MRPS34
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	KCTD5 WFIKKN1 TSR3 CAPN15 SNORA10 CASKIN1 SOX8 AXIN1 PKD1 MPG LOC105371047 MSLN NDUFB10 TPSB2 DNASE1L2 ATP6V0C CHTF18 LOC100287175 LOC106660606 PGP RPS2 DDX11L10 HBZ LOC107984876 NTHL1 LOC652276 CEMP1 PDPK1 RPL23AP5 HS3ST6 LOC101929280 SLC9A3R2 TMEM204 LOC100134368 LOC105371049 ABCA17P SSTR5 MAPK8IP3 TPSD1 SNORA78 C16orf59 GNPTG TPSG1 IFT140 MEIOB ECI1 EME2 C16orf91 POLR3K MIR6511B1 NTN3 RAB40C MRPL28 PTX4 BRICD5 NME3 C1QTNF8 LOC105371046 TPSAB1 MIR6767 NME4 MIR3677 NUBP2 TRAF7 NPW MIR3177 SNHG9 TELO2 TMEM8A AMDHD2 LOC105371038 MIR662 UBE2I TSC2 JMJD8 CCNF MIR3178 RPUSD1 DECR2 RPL3L ARHGDIG NARFL SNORA64 PIGQ SNRNP25 RNPS1 WASIR2 MIR4717 LOC105371045 MIR940 LINC00254 STUB1 METTL26 E4F1 FAHD1 HBQ1 SPSB3 PRR35 RGS11 FAM173A METRN ABCA3 LUC7L IGFALS RHBDF1 CLCN7 UNKL GFER PRSS29P NHLRC4 MLST8 TBC1D24 TBL3 NPRL3 MIR4516 SYNGR3 HBM BAIAP3 LMF1-AS1 SNHG19 WDR24 RNF151 HAGHL RAB11FIP3 MSRB1 FBXL16 NOXO1 MIR1225 CCDC154 ERVK13-1 HBA1 FAM234A PRR25 WDR90 LOC729652 CRAMP1 HBA2 MIR5587 CCDC78 LMF1 PDIA2 HN1L RAB26 SSTR5-AS1 CACNA1H SNORD60 MCRIP2 LOC105371184 MIR3180-5 MIR3176 MIR6768 HAGH RHOT2 PRSS27 RHBDL1 LOC107987233 ZNF598 MIR6859-4 FLJ42627 GNG13 MRPS34 LINC00235
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	EME2 IGFALS NUBP2 MAPK8IP3 HAGH SPSB3 NME3 MRPS34
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	EME2 IGFALS NUBP2 MIR3177 MAPK8IP3 SPSB3 NME3 MRPS34
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	EME2 IGFALS NUBP2 MAPK8IP3 SPSB3 NME3 MRPS34
nsv1042986	Chr.16:1784723 - 1866102 on Build GRCh38	Loss	MEIOB IGFALS NUBP2 FAHD1 HAGH
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	EME2 IGFALS HN1L NME3 LOC105371046 NUBP2 MIR3177 MAPK8IP3 HAGH SPSB3 CRAMP1 MRPS34 IFT140
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	EME2 IGFALS NUBP2 MAPK8IP3 SPSB3 NME3 MRPS34
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	MEIOB EME2 IGFALS HN1L NME3 LOC105371046 TMEM204 LOC105371047 NUBP2 MIR3177 FAHD1 MAPK8IP3 HAGH SPSB3 CRAMP1 TELO2 MRPS34 IFT140
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	EME2 IGFALS NUBP2 MAPK8IP3 SPSB3 NME3 MRPS34
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	MEIOB EME2 IGFALS HN1L NME3 NUBP2 MIR3177 FAHD1 MAPK8IP3 HAGH SPSB3 CRAMP1 MRPS34
nsv457336	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	EME2 IGFALS NUBP2 MAPK8IP3 SPSB3 NME3 MRPS34
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	EME2 IGFALS NUBP2 MIR3177 FAHD1 MAPK8IP3 HAGH SPSB3 NME3 MRPS34

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding