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See other MSH5-SAPCD1 CNV Assays ›
Gene Symbol
MSH5-SAPCD1
Assay Reference Genome
Location

Chr.6:31764447 on build GRCh38
Cytoband
6p21.33
Assay ID Hs02277197_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 100532732

Gene Name:

 MSH5-SAPCD1 readthrough (NMD candidate)

Gene Aliases:

 MSH5-C6orf26

Location:

 Chr.6:31739948-31764850 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 28 - Exon 29
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MSH5-SAPCD1 NR_037846.1
AJ245661.1 CAB52406.1
AL122094.1 CAB59262.1

Target Gene Details

Entrez Gene ID:

 401251

Gene Name:

 suppressor APC domain containing 1

Gene Aliases:

 C6orf26, NG23

Location:

 Chr.6:31762996-31764850 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAPCD1 NM_001039651.1 NP_001034740.1
AI765046.1
BC137541.1
BC137542.1
BU162048.1

Target Gene Details

Entrez Gene ID:

 104413891

Gene Name:

 SAPCD1 antisense RNA 1

Gene Aliases:

 C6orf26-AS1

Location:

 Chr.6:31764135-31765588 on Build GRCh38

Assay Gene Location:

 Within Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAPCD1-AS1 NR_126423.1 2 324
BM509003.1 2 331
BU680278.1 1 328

Target Gene Details

Entrez Gene ID:

 80737

Gene Name:

 von Willebrand factor A domain containing 7

Gene Aliases:

 C6orf27, G7c, NG37

Location:

 Chr.6:31764135-31777331 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VWA7 XM_005249427.2 16 4139 XP_005249484.1
XM_017011327.1 15 4174 XP_016866816.1
XM_017011328.1 16 4285 XP_016866817.1
XM_017011329.1 14 3683 XP_016866818.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion LOC100507547 HLA-DRB5 MSH5 CLIC1 STK19 MICB SNORA38 MIR6832 AGER DXO C6orf47 SNORD84 DDX39B-AS1 C6orf10 LY6G5C SLC44A4 LY6G6D SNORD48 ATP6V1G2 LTA TNXA HCP5 NOTCH4 ZBTB12 NEU1 GPANK1 FKBPL AGPAT1 GPSM3 HCG26 MIR1236 EHMT2 LOC102725068 EGFL8 SAPCD1 C4B PRRC2A CFB LY6G6F BTNL2 BAG6 NCR3 SNORD117 HLA-DRA HSPA1L NFKBIL1 LY6G5B CSNK2B HSPA1B TNXB VWA7 LY6G6C HCG23 MIR6721 SNORD52 HSPA1A C6orf48 LSM2 LTB PPT2 ABHD16A HLA-DRB6 SKIV2L C2-AS1 LOC101929163 ATF6B HLA-DRB1 MCCD1 RNF5 AIF1 PRRT1 DDX39B DDAH2 CYP21A1P C6orf25 LST1 C2 LOC100287329 NELFE PBX2 MSH5-SAPCD1 SAPCD1-AS1 LY6G6E MIR6833 VARS ATP6V1G2-DDX39B CYP21A2 APOM TNF MIR4646 C4A PPT2-EGFL8
esv2763547 Chr.6:31748105 - 31770701 on Build GRCh38 Loss SAPCD1-AS1 MSH5 SAPCD1 VWA7 MSH5-SAPCD1
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss HLA-B MSH5 CLIC1 STK19 MICB SNORA38 MIR6832 DXO C6orf47 SNORD84 DDX39B-AS1 MICA LY6G5C SLC44A4 LY6G6D SNORD48 ATP6V1G2 LTA TNXA HCP5 ZBTB12 MIR6891 NEU1 GPANK1 HCG26 MIR1236 EHMT2 LOC102725068 SAPCD1 C4B PRRC2A CFB LY6G6F BAG6 NCR3 SNORD117 HSPA1L NFKBIL1 LY6G5B CSNK2B HSPA1B TNXB VWA7 LY6G6C SNORD52 HSPA1A C6orf48 LSM2 LTB ABHD16A SKIV2L C2-AS1 MCCD1 AIF1 DDX39B DDAH2 CYP21A1P C6orf25 LST1 C2 LOC100287329 NELFE MSH5-SAPCD1 SAPCD1-AS1 LY6G6E VARS ATP6V1G2-DDX39B CYP21A2 APOM TNF MIR4646 C4A
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion LOC100507547 VPS52 MSH5 HLA-DMB RPS18 STK19 HLA-DOB SNORA38 HLA-DOA HSD17B8 SNORD84 DDX39B-AS1 ZBTB22 TAP1 RXRB SLC39A7 SNORD48 ATP6V1G2 TNXA CUTA RGL2 HCG25 HLA-DPB2 FKBPL TAP2 MIR5004 AGPAT1 HCG26 EHMT2 LOC102725068 SAPCD1 HLA-DQA1 LY6G6F HLA-DPA1 SNORD117 HLA-DRA NFKBIL1 B3GALT4 SYNGAP1 CSNK2B HSPA1B VWA7 HCG23 HSPA1A HLA-DQA2 C6orf48 LSM2 HLA-DPB1 HCG24 HLA-DRB6 C2-AS1 LOC101929163 HLA-DQB1 MCCD1 PRRT1 C6orf25 LST1 NELFE PBX2 LY6G6E VARS ATP6V1G2-DDX39B MIR3135B CYP21A2 APOM PPT2-EGFL8 PFDN6 HLA-DRB5 CLIC1 MIR6834 PSMB8-AS1 DAXX MICB MIR6832 AGER DXO C6orf47 C6orf10 LY6G5C SLC44A4 TAPBP LY6G6D PHF1 RING1 LTA HCP5 NOTCH4 ZBTB12 LOC100294145 NEU1 GPANK1 PPP1R2P1 HLA-DQB2 PSMB8 GPSM3 MIR1236 COL11A2 EGFL8 C4B PRRC2A CFB BTNL2 BAG6 NCR3 BRD2 HSPA1L LY6G5B TNXB LY6G6C MIR6721 SNORD52 ZBTB9 LTB MIR219A1 HLA-DQB1-AS1 PPT2 MIR6873 ABHD16A SKIV2L ATF6B HLA-DRB1 RNF5 AIF1 HLA-DMA DDX39B DDAH2 CYP21A1P C2 LOC100287329 MSH5-SAPCD1 SAPCD1-AS1 WDR46 MIR6833 KIFC1 TNF MIR4646 PSMB9 C4A
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion LOC100507547 VPS52 MSH5 HLA-DMB RPS18 STK19 HLA-DOB SNORA38 HLA-DOA HSD17B8 SNORD84 DDX39B-AS1 ZBTB22 TAP1 RXRB SLC39A7 SNORD48 ATP6V1G2 TNXA CUTA RGL2 HCG25 HLA-DPB2 FKBPL TAP2 MIR5004 AGPAT1 HCG26 EHMT2 LOC102725068 SAPCD1 HLA-DQA1 LY6G6F HLA-DPA1 SNORD117 HLA-DRA NFKBIL1 B3GALT4 SYNGAP1 CSNK2B HSPA1B VWA7 HCG23 HSPA1A HLA-DQA2 C6orf48 LSM2 HLA-DPB1 HCG24 HLA-DRB6 C2-AS1 LOC101929163 HLA-DQB1 MCCD1 PRRT1 C6orf25 LST1 NELFE PBX2 LY6G6E VARS ATP6V1G2-DDX39B MIR3135B CYP21A2 APOM PPT2-EGFL8 PFDN6 HLA-DRB5 CLIC1 MIR6834 PSMB8-AS1 DAXX MICB MIR6832 AGER DXO C6orf47 C6orf10 LY6G5C SLC44A4 TAPBP LY6G6D PHF1 RING1 LTA HCP5 NOTCH4 ZBTB12 LOC100294145 NEU1 GPANK1 PPP1R2P1 HLA-DQB2 PSMB8 GPSM3 MIR1236 COL11A2 EGFL8 C4B PRRC2A CFB BTNL2 BAG6 NCR3 BRD2 HSPA1L LY6G5B TNXB LY6G6C MIR6721 SNORD52 ZBTB9 LTB MIR219A1 HLA-DQB1-AS1 PPT2 MIR6873 ABHD16A SKIV2L ATF6B HLA-DRB1 RNF5 AIF1 HLA-DMA DDX39B DDAH2 CYP21A1P C2 LOC100287329 MSH5-SAPCD1 SAPCD1-AS1 WDR46 MIR6833 KIFC1 TNF MIR4646 PSMB9 C4A
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss HLA-B LOC100507547 MSH5 CLIC1 STK19 MICB SNORA38 MIR6832 AGER DXO C6orf47 SNORD84 DDX39B-AS1 C6orf10 MICA LY6G5C SLC44A4 LY6G6D SNORD48 ATP6V1G2 LTA TNXA HCP5 NOTCH4 ZBTB12 MIR6891 NEU1 GPANK1 FKBPL AGPAT1 GPSM3 HCG26 MIR1236 EHMT2 LOC102725068 EGFL8 SAPCD1 C4B PRRC2A CFB LY6G6F BTNL2 BAG6 NCR3 SNORD117 HLA-DRA HSPA1L NFKBIL1 LY6G5B CSNK2B HSPA1B TNXB VWA7 LY6G6C HCG23 MIR6721 SNORD52 HSPA1A C6orf48 LSM2 LTB PPT2 ABHD16A SKIV2L C2-AS1 LOC101929163 ATF6B MCCD1 RNF5 AIF1 PRRT1 DDX39B DDAH2 CYP21A1P C6orf25 LST1 C2 LOC100287329 NELFE PBX2 MSH5-SAPCD1 SAPCD1-AS1 LY6G6E MIR6833 VARS ATP6V1G2-DDX39B CYP21A2 APOM TNF MIR4646 C4A PPT2-EGFL8

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More Information


Set Membership:

 Intragenic Exonic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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