Name: [Hs02278974_cn] [B3GNTL1]
Creator: Thermo Fisher Scientific
Keywords: [B3GNTL1] Assay, [UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	146712
Gene Name:	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1
Gene Aliases:	3-Gn-T8, B3GNT8, BGnT-8, beta-1, beta3Gn-T8, beta3GnTL1
Location:	Chr.17:82942149-83051845 on Build GRCh38
Assay Gene Location:	Within Exon 20

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
B3GNTL1	NM_001009905.2	13	2583	NP_001009905.1
	NM_001320742.1	14	2701	NP_001307671.1
	NM_001320743.1	9	3178	NP_001307672.1
	NR_135465.1	14	2938
	NR_135466.1	10	2010
	AK054757.1	10	2010
	BU623325.1	1	453

Target Gene Details

Entrez Gene ID:	6904
Gene Name:	tubulin folding cofactor D
Gene Aliases:	SSD-1, tfcD
Location:	Chr.17:82752048-82943186 on Build GRCh38
Assay Gene Location:	Within Exon 56

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TBCD	NM_005993.4	39	3837	NP_005984.3
	XM_005256396.4	38	3802	XP_005256453.1
	XM_005256399.4	27	2634	XP_005256456.1
	XM_005256404.4	27	2676	XP_005256461.1
	XM_006722290.2	38	3734	XP_006722353.1
	XM_006722291.3	27	2958	XP_006722354.1
	XM_006722292.2	25	2370	XP_006722355.1
	XM_011523589.1	34	3377	XP_011521891.1
	XM_011523590.1	34	3458	XP_011521892.1
	XM_011523591.1	34	3362	XP_011521893.1
	XM_011523593.1	33	2969	XP_011521895.1
	XM_011523594.1	26	2439	XP_011521896.1
	XM_011523595.2	26	2517	XP_011521897.1
	XM_011523597.2	24	3170	XP_011521899.1
	XM_011523598.1	24	2228	XP_011521900.1
	XM_011523599.2	24	2946	XP_011521901.1
	XM_011523600.2	25	2390	XP_011521902.1
	XM_017024987.1	39	3698	XP_016880476.1
	XM_017024989.1	23	2084	XP_016880478.1
	XM_017024990.1	27	2456	XP_016880479.1
	AA421669.1	2	200
	AB023205.1	39	3816
	AF193042.1	7	1813	AAG22470.1
	AJ006417.1	40	3861	CAA07022.1
	AK057975.1	20	1715
	AK091959.1	27	2469	BAC03777.1
	AK129619.1	2	1269	BAC85197.1
	AL133562.1	35	3282	CAB63716.1
	BC003094.1	39	3837	AAH03094.1
	BC012824.2	12	1294	AAH12824.2
	BC039654.1	25	2190	AAH39654.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1067553	Chr.17:82530808 - 83091923 on Build GRCh38	Loss	FN3KRP LOC105371944 LOC101929552 METRNL RAB40B LOC105376791 TBCD B3GNTL1 WDR45B MIR4525 FN3K FOXK2 ZNF750
dgv3296n100	Chr.17:82851564 - 83091923 on Build GRCh38	Gain	TBCD B3GNTL1 LOC105371944 METRNL
nsv428351	Chr.17:81152631 - 83064073 on Build GRCh38	Gain	TEPSIN SNORD134 HEXDC FN3KRP LOC105371944 ANAPC11 CEP131 SECTM1 MIR6787 SLC16A3 RAB40B NARF FSCN2 NPB BAHCC1 MIR6786 PYCR1 PCYT2 C17orf62 LINC00482 WDR45B RFNG DCXR OXLD1 SIRT7 OGFOD3 SLC38A10 CD7 MYADML2 LOC101929511 RAC3 CSNK1D CCDC57 FASN ARL16 TSPAN10 ALYREF LOC105376790 FN3K MRPL12 PPP1R27 MAFG LOC101929552 MIR4740 TMEM105 LOC105376791 B3GNTL1 MCRIP1 GPS1 HGS MAFG-AS1 NOTUM MIR4525 TEX19 ACTG1 PDE6G LRRC45 P4HB ASPSCR1 STRA13 GCGR DUS1L SLC25A10 NPLOC4 MIR3186 UTS2R CCDC137 FAAP100 ARHGDIA TBCD AATK-AS1 LOC105371925 LOC100130370 FOXK2 C17orf89 AATK ZNF750
nsv576217	Chr.17:82937869 - 82960820 on Build GRCh38	Loss	TBCD B3GNTL1 LOC105371944
dgv3297n100	Chr.17:82879855 - 83048753 on Build GRCh38	Gain	TBCD B3GNTL1 LOC105371944
nsv1057153	Chr.17:82876571 - 83091923 on Build GRCh38	Loss	TBCD B3GNTL1 LOC105371944 METRNL
esv3893052	Chr.17:82895301 - 83102003 on Build GRCh38	Gain	TBCD B3GNTL1 LOC105371944 METRNL
esv21913	Chr.17:81828123 - 83103548 on Build GRCh38	Gain+Loss	SNORD134 HEXDC FN3KRP LOC105371944 ANAPC11 SECTM1 METRNL MIR6787 SLC16A3 RAB40B NARF NPB PYCR1 PCYT2 C17orf62 WDR45B RFNG DCXR SIRT7 OGFOD3 CD7 MYADML2 LOC101929511 RAC3 CSNK1D CCDC57 FASN ALYREF LOC105376790 FN3K PPP1R27 MAFG LOC101929552 LOC105376791 B3GNTL1 MCRIP1 GPS1 MAFG-AS1 NOTUM MIR4525 TEX19 LRRC45 P4HB ASPSCR1 STRA13 DUS1L UTS2R ARHGDIA TBCD FOXK2 ZNF750