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Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32170983 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02301638_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 3 623 NP_006402.1
NM_032741.4 3 408 NP_116130.2
XM_005248805.3 3 926 XP_005248862.1
XM_005248806.2 3 819 XP_005248863.1
XM_011514234.1 3 590 XP_011512536.1
AF007145.1 2 172 AAC19153.1
AF218034.1 3 385 AAG17276.1
AK056346.1
AK058025.1 4 528
AK129818.1 3 369
AK299252.1
AK315950.1
BC002402.2 3 362 AAH02402.1
BC003007.1 3 362 AAH03007.1
BC004310.1 3 567 AAH04310.1
BC090849.1 3 579 AAH90849.1
DA529681.1
DB118884.1 3 409
U56417.1 3 606 AAB58775.1
U75971.1 2 297 AAB96378.1
Y09565.1 3 397 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PBX2 AGER LOC100507547 MIR6833 AGPAT1 ATF6B PPT2 FKBPL PPT2-EGFL8 RNF5 TNXB MIR6721 EGFL8 PRRT1 NOTCH4 GPSM3
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss C4A PBX2 AGER SNORD48 NEU1 HLA-DQB1 STK19 C6orf48 LOC101929163 EGFL8 HLA-DRB5 PRRT1 HLA-DRB6 NELFE ATF6B SNORD52 PPT2-EGFL8 SLC44A4 HSPA1A TNXB CFB HCG23 HSPA1B SKIV2L ZBTB12 LOC100507547 AGPAT1 C2-AS1 DXO MIR1236 CYP21A2 PPT2 FKBPL RNF5 C2 MIR6721 NOTCH4 C6orf10 HLA-DQA1 CYP21A1P HLA-DRA BTNL2 MIR6833 C4B TNXA HLA-DRB1 HLA-DQB1-AS1 EHMT2 GPSM3
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss C4A PBX2 AGER LOC100507547 AGPAT1 CYP21A2 HLA-DQB1 PPT2 FKBPL RNF5 HLA-DQB2 LOC101929163 MIR6721 EGFL8 HLA-DRB5 PRRT1 NOTCH4 C6orf10 HLA-DQA1 CYP21A1P HLA-DRB6 MIR3135B HLA-DRA BTNL2 MIR6833 C4B ATF6B PPT2-EGFL8 TNXB HCG23 HLA-DQA2 TNXA HLA-DRB1 HLA-DQB1-AS1 GPSM3
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss C4A PBX2 AGER LOC100507547 AGPAT1 C2-AS1 DXO MIR1236 CYP21A2 PPT2 FKBPL RNF5 C2 STK19 MIR6721 EGFL8 PRRT1 NOTCH4 CYP21A1P MIR6833 NELFE C4B ATF6B PPT2-EGFL8 TNXB CFB TNXA SKIV2L GPSM3
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion C4A PBX2 MSH5-SAPCD1 AGER SNORD48 NEU1 HCG26 LY6G6D STK19 MIR4646 DDX39B C6orf48 LOC101929163 EGFL8 MCCD1 HLA-DRB5 PRRT1 SNORA38 HLA-DRB6 AIF1 NELFE NCR3 ATF6B LST1 SNORD52 PPT2-EGFL8 SLC44A4 MSH5 HSPA1A TNXB LY6G6F CFB HCG23 ATP6V1G2-DDX39B DDX39B-AS1 HSPA1B SNORD84 SKIV2L LOC100287329 HSPA1L LSM2 ATP6V1G2 TNF ZBTB12 LOC100507547 AGPAT1 C2-AS1 DXO C6orf47 MIR1236 CYP21A2 PPT2 FKBPL RNF5 MIR6832 SAPCD1-AS1 C2 MICB MIR6721 LY6G5C NOTCH4 C6orf10 HCP5 LY6G6E C6orf25 SAPCD1 CYP21A1P ABHD16A PRRC2A LOC102725068 HLA-DRA BTNL2 MIR6833 C4B LTB NFKBIL1 BAG6 DDAH2 LY6G5B LTA SNORD117 VWA7 VARS CSNK2B APOM TNXA LY6G6C CLIC1 HLA-DRB1 GPANK1 EHMT2 GPSM3
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion PBX2 AGER SNORD48 HCG26 MIR5004 HLA-DQB1 RING1 STK19 MIR4646 TAP2 MIR6834 EGFL8 MCCD1 PRRT1 LST1 PPT2-EGFL8 SLC39A7 CFB HSPA1B HLA-DQA2 SKIV2L HSPA1L PSMB8 PFDN6 HCG24 TNF ZBTB12 LOC100507547 AGPAT1 C2-AS1 MIR1236 CYP21A2 FKBPL RNF5 PSMB8-AS1 ZBTB9 HLA-DQB2 MICB LOC100294145 LY6G5C NOTCH4 HCP5 LY6G6E HLA-DQA1 CYP21A1P HLA-DPA1 ABHD16A HCG25 HLA-DOA HLA-DRA B3GALT4 LTA HLA-DMA ZBTB22 SNORD117 RPS18 HLA-DPB2 TNXA LY6G6C MIR219A1 GPANK1 HLA-DQB1-AS1 EHMT2 VPS52 C4A HSD17B8 MSH5-SAPCD1 NEU1 CUTA TAPBP LY6G6D DDX39B C6orf48 LOC101929163 HLA-DRB5 HLA-DOB SNORA38 HLA-DRB6 AIF1 RXRB NELFE COL11A2 NCR3 ATF6B SNORD52 SLC44A4 MSH5 HSPA1A TNXB LY6G6F PSMB9 KIFC1 HCG23 ATP6V1G2-DDX39B DDX39B-AS1 DAXX SNORD84 LOC100287329 MIR6873 LSM2 WDR46 BRD2 ATP6V1G2 DXO C6orf47 PPT2 MIR6832 SAPCD1-AS1 C2 TAP1 SYNGAP1 MIR6721 C6orf10 C6orf25 SAPCD1 PRRC2A MIR3135B LOC102725068 BTNL2 MIR6833 C4B LTB NFKBIL1 BAG6 DDAH2 LY6G5B HLA-DMB VWA7 PPP1R2P1 VARS CSNK2B APOM RGL2 CLIC1 HLA-DRB1 PHF1 GPSM3 HLA-DPB1
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PBX2 AGER LOC100507547 MIR6833 AGPAT1 ATF6B PPT2 FKBPL PPT2-EGFL8 RNF5 TNXB MIR6721 EGFL8 PRRT1 NOTCH4 GPSM3
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion PBX2 AGER SNORD48 HCG26 MIR5004 HLA-DQB1 RING1 STK19 MIR4646 TAP2 MIR6834 EGFL8 MCCD1 PRRT1 LST1 PPT2-EGFL8 SLC39A7 CFB HSPA1B HLA-DQA2 SKIV2L HSPA1L PSMB8 PFDN6 HCG24 TNF ZBTB12 LOC100507547 AGPAT1 C2-AS1 MIR1236 CYP21A2 FKBPL RNF5 PSMB8-AS1 ZBTB9 HLA-DQB2 MICB LOC100294145 LY6G5C NOTCH4 HCP5 LY6G6E HLA-DQA1 CYP21A1P HLA-DPA1 ABHD16A HCG25 HLA-DOA HLA-DRA B3GALT4 LTA HLA-DMA ZBTB22 SNORD117 RPS18 HLA-DPB2 TNXA LY6G6C MIR219A1 GPANK1 HLA-DQB1-AS1 EHMT2 VPS52 C4A HSD17B8 MSH5-SAPCD1 NEU1 CUTA TAPBP LY6G6D DDX39B C6orf48 LOC101929163 HLA-DRB5 HLA-DOB SNORA38 HLA-DRB6 AIF1 RXRB NELFE COL11A2 NCR3 ATF6B SNORD52 SLC44A4 MSH5 HSPA1A TNXB LY6G6F PSMB9 KIFC1 HCG23 ATP6V1G2-DDX39B DDX39B-AS1 DAXX SNORD84 LOC100287329 MIR6873 LSM2 WDR46 BRD2 ATP6V1G2 DXO C6orf47 PPT2 MIR6832 SAPCD1-AS1 C2 TAP1 SYNGAP1 MIR6721 C6orf10 C6orf25 SAPCD1 PRRC2A MIR3135B LOC102725068 BTNL2 MIR6833 C4B LTB NFKBIL1 BAG6 DDAH2 LY6G5B HLA-DMB VWA7 PPP1R2P1 VARS CSNK2B APOM RGL2 CLIC1 HLA-DRB1 PHF1 GPSM3 HLA-DPB1
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss C4A HLA-B PBX2 MSH5-SAPCD1 AGER SNORD48 NEU1 HCG26 LY6G6D STK19 MIR4646 DDX39B C6orf48 LOC101929163 EGFL8 MCCD1 PRRT1 SNORA38 AIF1 NELFE NCR3 ATF6B LST1 SNORD52 PPT2-EGFL8 SLC44A4 MSH5 HSPA1A TNXB LY6G6F CFB HCG23 ATP6V1G2-DDX39B DDX39B-AS1 HSPA1B SNORD84 SKIV2L LOC100287329 HSPA1L LSM2 MICA ATP6V1G2 MIR6891 TNF ZBTB12 LOC100507547 AGPAT1 C2-AS1 DXO C6orf47 MIR1236 CYP21A2 PPT2 FKBPL RNF5 MIR6832 SAPCD1-AS1 C2 MICB MIR6721 LY6G5C NOTCH4 C6orf10 HCP5 LY6G6E C6orf25 SAPCD1 CYP21A1P ABHD16A PRRC2A LOC102725068 HLA-DRA BTNL2 MIR6833 C4B LTB NFKBIL1 BAG6 DDAH2 LY6G5B LTA SNORD117 VWA7 VARS CSNK2B APOM TNXA LY6G6C CLIC1 GPANK1 EHMT2 GPSM3

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