Hs02316044_cn

• Gene Symbol: TRAPPC2L
• Assay Reference Genome Location: Chr.16:88858804 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 51693
• Gene Name: trafficking protein particle complex 2-like
• Gene Aliases: HSPC176
• Location: Chr.16:88856220-88862686 on Build GRCh38
• Assay Gene Location: Overlaps Exon 3 - Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRAPPC2L	NM_001318524.1			NP_001305453.1
	NM_001318525.1			NP_001305454.1
	NM_001318526.1			NP_001305455.1
	NM_001318527.1			NP_001305456.1
	NM_001318528.1			NP_001305457.1
	NM_001318529.1			NP_001305458.1
	NM_001318530.1			NP_001305459.1
	NM_001318532.1			NP_001305461.1
	NM_016209.4			NP_057293.1
	NR_134670.1
	NR_134671.1
	XM_017023270.1			XP_016878759.1
	AF089106.1			AAF00568.1
	AF161524.1			AAF29139.1
	AK126779.1			BAC86686.1
	AK307253.1
	AK310805.1
	AK311885.1
	AX771012.1			CAE01175.1
	AX771013.1			CAE01176.1
	AX771014.1			CAE01177.1
	BC011369.1			AAH11369.1
	BC018024.1			AAH18024.1
	BC105809.1			AAI05810.1
	BG283878.1
	BI754306.1
	BX340702.2
	BX384775.2
	BX419849.2
	DA209193.1
	DA293122.1
	DA295904.1
	DA833474.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n68	Chr.16:88767460 - 88944903 on Build GRCh38	Loss	PABPN1L LOC107987238 LOC105371409 APRT CBFA2T3 PIEZO1 GALNS LOC101927793 LOC100129697 TRAPPC2L CDT1
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	PABPN1L LOC107987238 LOC400558 SLC22A31 LOC105371409 CDH15 CTU2 ACSF3 MIR4722 GALNS LINC00304 LOC339059 LOC100289580 LOC100129697 TRAPPC2L APRT CBFA2T3 PIEZO1 ZNF778 LOC101927793 CDT1
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	PABPN1L LOC107987238 LOC400558 SLC22A31 LOC105371409 CDH15 ACSF3 GALNS LINC00304 LOC100129697 TRAPPC2L APRT CBFA2T3 LOC101927793 CDT1
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	PABPN1L LOC107987238 LOC400558 SLC22A31 LOC105371409 CDH15 ANKRD11 ACSF3 GALNS LINC00304 LOC339059 LOC100289580 LOC100129697 TRAPPC2L APRT CBFA2T3 PIEZO1 ZNF778 LOC100287036 LOC105371414 LOC101927793 CDT1
esv3639555	Chr.16:88745961 - 88899576 on Build GRCh38	Gain	PABPN1L LOC107987238 APRT CBFA2T3 PIEZO1 GALNS LOC101927793 TRAPPC2L CDT1
nsv952071	Chr.16:88790893 - 89019992 on Build GRCh38	Deletion	PABPN1L LOC107987238 LOC105371409 APRT CBFA2T3 GALNS LOC101927793 LOC100129697 TRAPPC2L CDT1
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	PABPN1L LOC107987238 LOC400558 LOC105371409 CDH15 ACSF3 GALNS LINC00304 LOC100129697 TRAPPC2L APRT CBFA2T3 LOC101927793 CDT1
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	MVD GAS8 SLC22A31 LOC105371409 FAM157C SPATA2L DPEP1 LOC100289580 TUBB8P7 TUBB3 ZNF276 CHMP1A CBFA2T3 DEF8 LOC101927817 SNAI3-AS1 MIR4722 GALNS LOC339059 GAS8-AS1 LOC107984817 APRT LOC105371419 LOC101927793 PABPN1L LOC400558 CDH15 AFG3L1P ANKRD11 DBNDD1 MC1R TCF25 TRAPPC2L SNAI3 CPNE7 CDK10 SNORD68 ZNF778 LOC105371414 IL17C SPIRE2 VPS9D1 CDT1 LOC107987238 SPATA33 PRDM7 CTU2 RPL13 CENPBD1 ACSF3 VPS9D1-AS1 SPG7 LINC00304 FANCA LOC100129697 RNF166 URAHP PIEZO1 LOC100287036 CYBA
esv3639561	Chr.16:88837996 - 88882065 on Build GRCh38	Gain	PABPN1L CBFA2T3 GALNS TRAPPC2L
nsv1061256	Chr.16:88711587 - 89013365 on Build GRCh38	Gain	PABPN1L LOC107987238 LOC105371409 CTU2 MIR4722 GALNS LOC339059 LOC100289580 LOC100129697 TRAPPC2L APRT CBFA2T3 PIEZO1 LOC101927793 CDT1
nsv1063441	Chr.16:88767066 - 88861882 on Build GRCh38	Loss	LOC107987238 APRT PIEZO1 GALNS TRAPPC2L CDT1

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

membrane traffic protein