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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32169346 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02321342_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 7 1117 NP_006402.1
NM_032741.4 7 902 NP_116130.2
XM_005248805.3 7 1420 XP_005248862.1
XM_005248806.2 7 1313 XP_005248863.1
XM_011514234.1 7 1084 XP_011512536.1
AF007145.1 6 666 AAC19153.1
AF218034.1 7 880 AAG17276.1
AK056346.1 5 1314
AK058025.1 8 1022
AK129818.1 7 863
AK299252.1 7 914
AK315950.1 6 903
BC002402.2 7 856 AAH02402.1
BC003007.1 7 856 AAH03007.1
BC004310.1 7 1061 AAH04310.1
BC090849.1 7 1073 AAH90849.1
U56417.1 7 1100 AAB58775.1
U75971.1 6 791 AAB96378.1
Y09565.1 7 891 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss PPT2-EGFL8 PBX2 AGER FKBPL LOC100507547 MIR6833 NOTCH4 ATF6B AGPAT1 GPSM3 TNXB PRRT1 EGFL8 MIR6721 RNF5 PPT2
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss HCG23 CYP21A1P HLA-DQA2 FKBPL HLA-DRB1 C4B MIR3135B AGPAT1 HLA-DRA TNXB HLA-DRB5 C4A LOC101929163 PPT2-EGFL8 HLA-DQB1-AS1 PBX2 HLA-DQB1 AGER LOC100507547 MIR6833 BTNL2 TNXA NOTCH4 HLA-DQA1 HLA-DQB2 ATF6B CYP21A2 GPSM3 PRRT1 EGFL8 MIR6721 RNF5 C6orf10 PPT2 HLA-DRB6
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss HCG23 HSPA1A CYP21A1P CFB SNORD52 FKBPL SNORD48 HLA-DRB1 SKIV2L ZBTB12 AGPAT1 HLA-DRA HLA-DRB5 NELFE C4A C2-AS1 PPT2-EGFL8 HLA-DQB1-AS1 HSPA1B HLA-DQB1 LOC100507547 MIR6833 HLA-DQA1 CYP21A2 DXO MIR6721 RNF5 C6orf10 C4B SLC44A4 NEU1 MIR1236 TNXB STK19 LOC101929163 PBX2 AGER BTNL2 TNXA NOTCH4 C6orf48 ATF6B EHMT2 GPSM3 C2 PRRT1 EGFL8 PPT2 HLA-DRB6
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss CYP21A1P CFB FKBPL SKIV2L C4B AGPAT1 MIR1236 TNXB NELFE STK19 C4A C2-AS1 PPT2-EGFL8 PBX2 AGER LOC100507547 MIR6833 TNXA NOTCH4 ATF6B CYP21A2 GPSM3 DXO C2 PRRT1 EGFL8 MIR6721 RNF5 PPT2
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion HCG23 CSNK2B LY6G6C HSPA1A VWA7 CYP21A1P CFB SNORD52 FKBPL SNORD48 HLA-DRB1 MSH5-SAPCD1 LY6G6D SKIV2L ZBTB12 DDAH2 ATP6V1G2-DDX39B C6orf47 LOC102725068 AGPAT1 HLA-DRA C6orf25 HLA-DRB5 ATP6V1G2 NELFE C4A C2-AS1 PPT2-EGFL8 SAPCD1-AS1 TNF PRRC2A HCP5 HSPA1B DDX39B-AS1 HCG26 VARS LOC100507547 MIR6833 MCCD1 SNORA38 NFKBIL1 CYP21A2 AIF1 DXO MIR6721 RNF5 C6orf10 MIR4646 APOM NCR3 SNORD117 C4B SLC44A4 MICB LST1 NEU1 LTA GPANK1 CLIC1 MIR1236 SAPCD1 TNXB BAG6 STK19 LOC101929163 PBX2 LOC100287329 LSM2 AGER LY6G5B BTNL2 TNXA NOTCH4 LY6G6F MSH5 HSPA1L C6orf48 ATF6B EHMT2 ABHD16A DDX39B LY6G5C GPSM3 LY6G6E C2 PRRT1 MIR6832 EGFL8 PPT2 HLA-DRB6 LTB SNORD84
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion KIFC1 HLA-DPB2 VWA7 CYP21A1P CFB SNORD48 ZBTB12 DDAH2 LOC102725068 MIR5004 HLA-DMB C6orf25 RGL2 ATP6V1G2 C4A PPT2-EGFL8 B3GALT4 TNF HCP5 HLA-DQB1 DDX39B-AS1 MIR6833 MCCD1 HLA-DQA1 HLA-DQB2 SNORA38 NFKBIL1 AIF1 DXO TAPBP PFDN6 RNF5 SLC39A7 MIR6834 ZBTB22 SNORD117 MICB PPP1R2P1 LTA HCG24 LOC101929163 PSMB8-AS1 HCG25 LOC100287329 LSM2 AGER TAP2 HLA-DOA NOTCH4 LOC100294145 LY6G6F HSPA1L C6orf48 ATF6B EHMT2 GPSM3 C2 PRRT1 PPT2 HLA-DRB6 SNORD84 HCG23 CSNK2B LY6G6C HSPA1A PSMB9 HLA-DPB1 SNORD52 HLA-DQA2 FKBPL HLA-DRB1 MSH5-SAPCD1 LY6G6D RPS18 SKIV2L ATP6V1G2-DDX39B DAXX C6orf47 AGPAT1 TAP1 HLA-DRA HLA-DRB5 NELFE C2-AS1 HLA-DQB1-AS1 SAPCD1-AS1 PRRC2A HSPA1B HCG26 VARS LOC100507547 VPS52 ZBTB9 CYP21A2 PHF1 MIR6721 C6orf10 HLA-DPA1 MIR4646 PSMB8 RXRB MIR219A1 APOM NCR3 C4B SLC44A4 BRD2 HSD17B8 MIR3135B LST1 NEU1 GPANK1 CLIC1 MIR1236 SAPCD1 TNXB BAG6 STK19 SYNGAP1 HLA-DMA HLA-DOB WDR46 PBX2 LY6G5B BTNL2 TNXA RING1 MSH5 COL11A2 ABHD16A DDX39B LY6G5C CUTA LY6G6E MIR6873 MIR6832 EGFL8 LTB
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss PPT2-EGFL8 PBX2 AGER FKBPL LOC100507547 MIR6833 NOTCH4 ATF6B AGPAT1 GPSM3 TNXB PRRT1 EGFL8 MIR6721 RNF5 PPT2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion KIFC1 HLA-DPB2 VWA7 CYP21A1P CFB SNORD48 ZBTB12 DDAH2 LOC102725068 MIR5004 HLA-DMB C6orf25 RGL2 ATP6V1G2 C4A PPT2-EGFL8 B3GALT4 TNF HCP5 HLA-DQB1 DDX39B-AS1 MIR6833 MCCD1 HLA-DQA1 HLA-DQB2 SNORA38 NFKBIL1 AIF1 DXO TAPBP PFDN6 RNF5 SLC39A7 MIR6834 ZBTB22 SNORD117 MICB PPP1R2P1 LTA HCG24 LOC101929163 PSMB8-AS1 HCG25 LOC100287329 LSM2 AGER TAP2 HLA-DOA NOTCH4 LOC100294145 LY6G6F HSPA1L C6orf48 ATF6B EHMT2 GPSM3 C2 PRRT1 PPT2 HLA-DRB6 SNORD84 HCG23 CSNK2B LY6G6C HSPA1A PSMB9 HLA-DPB1 SNORD52 HLA-DQA2 FKBPL HLA-DRB1 MSH5-SAPCD1 LY6G6D RPS18 SKIV2L ATP6V1G2-DDX39B DAXX C6orf47 AGPAT1 TAP1 HLA-DRA HLA-DRB5 NELFE C2-AS1 HLA-DQB1-AS1 SAPCD1-AS1 PRRC2A HSPA1B HCG26 VARS LOC100507547 VPS52 ZBTB9 CYP21A2 PHF1 MIR6721 C6orf10 HLA-DPA1 MIR4646 PSMB8 RXRB MIR219A1 APOM NCR3 C4B SLC44A4 BRD2 HSD17B8 MIR3135B LST1 NEU1 GPANK1 CLIC1 MIR1236 SAPCD1 TNXB BAG6 STK19 SYNGAP1 HLA-DMA HLA-DOB WDR46 PBX2 LY6G5B BTNL2 TNXA RING1 MSH5 COL11A2 ABHD16A DDX39B LY6G5C CUTA LY6G6E MIR6873 MIR6832 EGFL8 LTB
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss HCG23 CSNK2B LY6G6C HSPA1A VWA7 CYP21A1P CFB SNORD52 FKBPL SNORD48 MSH5-SAPCD1 LY6G6D SKIV2L ZBTB12 DDAH2 ATP6V1G2-DDX39B C6orf47 LOC102725068 AGPAT1 MICA HLA-DRA C6orf25 ATP6V1G2 NELFE C4A C2-AS1 PPT2-EGFL8 SAPCD1-AS1 TNF PRRC2A HCP5 HSPA1B DDX39B-AS1 HCG26 VARS LOC100507547 MIR6833 MCCD1 SNORA38 NFKBIL1 CYP21A2 AIF1 DXO MIR6721 RNF5 C6orf10 MIR4646 HLA-B APOM NCR3 SNORD117 C4B SLC44A4 MICB LST1 NEU1 LTA GPANK1 CLIC1 MIR1236 SAPCD1 TNXB BAG6 STK19 LOC101929163 PBX2 MIR6891 LOC100287329 LSM2 AGER LY6G5B BTNL2 TNXA NOTCH4 LY6G6F MSH5 HSPA1L C6orf48 ATF6B EHMT2 ABHD16A DDX39B LY6G5C GPSM3 LY6G6E C2 PRRT1 MIR6832 EGFL8 PPT2 LTB SNORD84

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