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See other AGPAT1 CNV Assays ›
Gene Symbol
AGPAT1
Assay Reference Genome
Location

Chr.6:32169346 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02321342_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10554

Gene Name:

 1-acylglycerol-3-phosphate O-acyltransferase 1

Gene Aliases:

 1-AGPAT1, G15, LPAAT-alpha, LPAATA

Location:

 Chr.6:32168206-32178111 on Build GRCh38

Assay Gene Location:

 Within Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
AGPAT1 NM_006411.3 7 1117 NP_006402.1
NM_032741.4 7 902 NP_116130.2
XM_005248805.3 7 1420 XP_005248862.1
XM_005248806.2 7 1313 XP_005248863.1
XM_011514234.1 7 1084 XP_011512536.1
AF007145.1 6 666 AAC19153.1
AF218034.1 7 880 AAG17276.1
AK056346.1 5 1314
AK058025.1 8 1022
AK129818.1 7 863
AK299252.1 7 914
AK315950.1 6 903
BC002402.2 7 856 AAH02402.1
BC003007.1 7 856 AAH03007.1
BC004310.1 7 1061 AAH04310.1
BC090849.1 7 1073 AAH90849.1
U56417.1 7 1100 AAB58775.1
U75971.1 6 791 AAB96378.1
Y09565.1 7 891 CAA70758.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830629 Chr.6:32076201 - 32222010 on Build GRCh38 Loss FKBPL NOTCH4 MIR6833 PBX2 RNF5 PRRT1 TNXB MIR6721 AGPAT1 EGFL8 AGER GPSM3 ATF6B LOC100507547 PPT2-EGFL8 PPT2
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss FKBPL SNORD48 HCG23 NELFE HLA-DQB1 NOTCH4 STK19 BTNL2 TNXB AGPAT1 GPSM3 ATF6B SKIV2L LOC101929163 PPT2 CYP21A1P DXO C6orf10 MIR1236 CFB HLA-DRA RNF5 MIR6721 EGFL8 LOC100507547 SNORD52 HLA-DRB5 CYP21A2 HLA-DQB1-AS1 EHMT2 MIR6833 C2-AS1 C2 HLA-DRB1 HSPA1A PRRT1 AGER NEU1 C6orf48 PPT2-EGFL8 SLC44A4 HSPA1B C4A TNXA HLA-DRB6 HLA-DQA1 PBX2 C4B ZBTB12
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss FKBPL CYP21A2 HLA-DQB1-AS1 HLA-DQB2 HCG23 HLA-DQB1 NOTCH4 MIR6833 BTNL2 HLA-DRB1 PRRT1 TNXB AGPAT1 AGER GPSM3 ATF6B LOC101929163 PPT2-EGFL8 PPT2 C4A TNXA CYP21A1P MIR3135B C6orf10 HLA-DRB6 HLA-DQA2 HLA-DQA1 HLA-DRA PBX2 RNF5 MIR6721 EGFL8 C4B LOC100507547 HLA-DRB5
esv2759415 Chr.6:31903735 - 32241336 on Build GRCh38 Gain+Loss FKBPL CYP21A2 NELFE NOTCH4 MIR6833 STK19 C2-AS1 C2 PRRT1 TNXB AGPAT1 AGER GPSM3 ATF6B SKIV2L PPT2-EGFL8 PPT2 C4A TNXA CYP21A1P DXO MIR1236 CFB PBX2 RNF5 MIR6721 EGFL8 C4B LOC100507547
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion FKBPL SNORD48 HCG23 NELFE HCP5 NOTCH4 STK19 MICB BTNL2 PRRC2A C6orf47 LY6G6C TNXB AGPAT1 AIF1 GPSM3 ATF6B VARS SKIV2L LOC101929163 MSH5 CSNK2B SAPCD1 PPT2 LTA LY6G6F SNORD84 CYP21A1P DXO C6orf10 LY6G6E MIR1236 DDX39B-AS1 MIR4646 CFB LY6G5B HLA-DRA RNF5 VWA7 LSM2 HCG26 MIR6721 EGFL8 MSH5-SAPCD1 LOC100507547 HSPA1L SNORD52 HLA-DRB5 LTB ATP6V1G2 DDAH2 LY6G6D CYP21A2 DDX39B NFKBIL1 EHMT2 SNORD117 MIR6833 C2-AS1 C2 HLA-DRB1 HSPA1A PRRT1 BAG6 AGER NEU1 C6orf48 CLIC1 GPANK1 PPT2-EGFL8 LOC102725068 ABHD16A LY6G5C SLC44A4 MCCD1 HSPA1B C4A TNXA HLA-DRB6 APOM MIR6832 PBX2 TNF LST1 NCR3 SNORA38 LOC100287329 C4B SAPCD1-AS1 ZBTB12 C6orf25 ATP6V1G2-DDX39B
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion FKBPL SNORD48 HLA-DQB2 NOTCH4 C6orf47 RING1 AGPAT1 AIF1 ATF6B MSH5 CSNK2B COL11A2 TAPBP KIFC1 CYP21A1P DXO C6orf10 MIR4646 CFB LY6G5B HLA-DRA RNF5 VWA7 HCG26 MIR6721 EGFL8 LOC100507547 HSPA1L HLA-DRB5 LTB ATP6V1G2 RPS18 LY6G6D CYP21A2 DDX39B HLA-DQB1-AS1 HLA-DOB PSMB8 MIR6833 C2 HLA-DRB1 HSPA1A BRD2 NEU1 WDR46 HLA-DMB CLIC1 GPANK1 PPT2-EGFL8 LOC102725068 ABHD16A SLC44A4 HCG24 PHF1 SLC39A7 HLA-DRB6 HLA-DQA2 MIR6832 SNORA38 C4B PSMB8-AS1 HSD17B8 C6orf25 ATP6V1G2-DDX39B HLA-DMA SYNGAP1 MIR6834 PPP1R2P1 HCG23 NELFE HLA-DQB1 HCP5 STK19 MIR219A1 MICB ZBTB22 BTNL2 PRRC2A HLA-DPA1 LY6G6C HLA-DPB2 TNXB GPSM3 VARS SKIV2L LOC101929163 PSMB9 DAXX SAPCD1 VPS52 PPT2 MIR5004 LTA LY6G6F SNORD84 MIR3135B PFDN6 LY6G6E RXRB MIR1236 DDX39B-AS1 LSM2 MSH5-SAPCD1 SNORD52 DDAH2 ZBTB9 NFKBIL1 EHMT2 SNORD117 MIR6873 LOC100294145 C2-AS1 B3GALT4 PRRT1 BAG6 AGER C6orf48 LY6G5C MCCD1 HSPA1B C4A TNXA CUTA TAP2 TAP1 APOM HLA-DQA1 PBX2 TNF LST1 HLA-DOA NCR3 HLA-DPB1 LOC100287329 RGL2 SAPCD1-AS1 HCG25 ZBTB12
nsv602104 Chr.6:32096949 - 32203906 on Build GRCh38 Loss FKBPL NOTCH4 MIR6833 PBX2 RNF5 PRRT1 TNXB MIR6721 AGPAT1 EGFL8 AGER GPSM3 ATF6B LOC100507547 PPT2-EGFL8 PPT2
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion FKBPL SNORD48 HLA-DQB2 NOTCH4 C6orf47 RING1 AGPAT1 AIF1 ATF6B MSH5 CSNK2B COL11A2 TAPBP KIFC1 CYP21A1P DXO C6orf10 MIR4646 CFB LY6G5B HLA-DRA RNF5 VWA7 HCG26 MIR6721 EGFL8 LOC100507547 HSPA1L HLA-DRB5 LTB ATP6V1G2 RPS18 LY6G6D CYP21A2 DDX39B HLA-DQB1-AS1 HLA-DOB PSMB8 MIR6833 C2 HLA-DRB1 HSPA1A BRD2 NEU1 WDR46 HLA-DMB CLIC1 GPANK1 PPT2-EGFL8 LOC102725068 ABHD16A SLC44A4 HCG24 PHF1 SLC39A7 HLA-DRB6 HLA-DQA2 MIR6832 SNORA38 C4B PSMB8-AS1 HSD17B8 C6orf25 ATP6V1G2-DDX39B HLA-DMA SYNGAP1 MIR6834 PPP1R2P1 HCG23 NELFE HLA-DQB1 HCP5 STK19 MIR219A1 MICB ZBTB22 BTNL2 PRRC2A HLA-DPA1 LY6G6C HLA-DPB2 TNXB GPSM3 VARS SKIV2L LOC101929163 PSMB9 DAXX SAPCD1 VPS52 PPT2 MIR5004 LTA LY6G6F SNORD84 MIR3135B PFDN6 LY6G6E RXRB MIR1236 DDX39B-AS1 LSM2 MSH5-SAPCD1 SNORD52 DDAH2 ZBTB9 NFKBIL1 EHMT2 SNORD117 MIR6873 LOC100294145 C2-AS1 B3GALT4 PRRT1 BAG6 AGER C6orf48 LY6G5C MCCD1 HSPA1B C4A TNXA CUTA TAP2 TAP1 APOM HLA-DQA1 PBX2 TNF LST1 HLA-DOA NCR3 HLA-DPB1 LOC100287329 RGL2 SAPCD1-AS1 HCG25 ZBTB12
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss FKBPL SNORD48 HCG23 NELFE HCP5 NOTCH4 STK19 MICB BTNL2 PRRC2A C6orf47 LY6G6C TNXB AGPAT1 AIF1 GPSM3 ATF6B VARS SKIV2L LOC101929163 MSH5 CSNK2B SAPCD1 PPT2 LTA LY6G6F SNORD84 CYP21A1P DXO C6orf10 LY6G6E MIR1236 DDX39B-AS1 MIR4646 CFB LY6G5B HLA-DRA RNF5 VWA7 LSM2 HCG26 MIR6721 EGFL8 MSH5-SAPCD1 LOC100507547 MIR6891 HSPA1L SNORD52 LTB ATP6V1G2 DDAH2 LY6G6D CYP21A2 DDX39B NFKBIL1 EHMT2 SNORD117 MIR6833 C2-AS1 C2 HSPA1A PRRT1 BAG6 AGER NEU1 C6orf48 CLIC1 GPANK1 PPT2-EGFL8 LOC102725068 ABHD16A LY6G5C SLC44A4 MCCD1 HSPA1B C4A TNXA MICA HLA-B APOM MIR6832 PBX2 TNF LST1 NCR3 SNORA38 LOC100287329 C4B SAPCD1-AS1 ZBTB12 C6orf25 ATP6V1G2-DDX39B

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