Hs02329019_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140841842 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2	1	521	NP_061734.1
	NM_031856.1	1	521	NP_114062.1
	AF152316.1	1	521	AAD43710.1
	AF152486.1	1	521	AAD43747.1
	BC136749.1	1	616
	BC136750.1	1	616

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA9 PCDHA1
nsv980734	Chr.5:140841022 - 140843672 on Build GRCh38	Duplication	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA1
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA10 PCDHA5 PCDHA2 PCDHA9 PCDHA1
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA9 PCDHA1
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA10 PCDHA5 PCDHA2 PCDHA9 PCDHA1
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA9 PCDHA1
esv27071	Chr.5:140836128 - 140842469 on Build GRCh38	Loss	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA1
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA8 PCDHGB2 TAF7 PCDHGB5 PCDHGA1 PCDHB15 PCDHB19P PCDHGB8P PCDHA13 PCDHB3 PCDHA7 PCDHB17P PCDHA4 PCDHGA6 PCDHAC1 PCDHGA7 PCDHA1 PCDHGA12 PCDHGB4 PCDHGA2 PCDHB4 PCDHA5 PCDHA2 PCDHGB6 SLC25A2 PCDHB14 PCDHB2 PCDHAC2 PCDHB16 PCDHB1 PCDHB12 PCDHGA3 PCDHGB7 PCDHGB3 PCDHA6 PCDHB8 PCDHA12 PCDHGA11 PCDHB13 PCDHGB1 PCDHB5 PCDHA11 PCDHA10 PCDHB18P PCDHGA4 PCDHB10 PCDHGA5 PCDHA8 PCDHB9 PCDHB7 PCDHA3 PCDHB11 PCDHA9 PCDHGA10 PCDHGA9 PCDHB6 LOC101926905
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA6 VTRNA1-3 HARS2 PCDHA11 PCDHA10 PCDHA5 PCDHA2 HARS PCDHA8 PCDHA7 VTRNA1-1 PCDHA4 PCDHA3 ZMAT2 VTRNA1-2 PCDHA9 PCDHA1
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA9 PCDHA1
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA11 PCDHA10 PCDHA5 PCDHA2 PCDHA9 PCDHA1
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA11 PCDHA10 PCDHA5 PCDHA2 PCDHA9 PCDHA1
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA10 PCDHA5 PCDHA2 PCDHA9 PCDHA1
esv3606956	Chr.5:140836164 - 140842460 on Build GRCh38	Loss	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA1
dgv970n67	Chr.5:140784829 - 140843644 on Build GRCh38	Gain	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA1
nsv436885	Chr.5:140835434 - 140846096 on Build GRCh38	Insertion	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA1
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA6 PCDHA8 PCDHA7 PCDHA4 PCDHA3 PCDHA5 PCDHA2 PCDHA9 PCDHA1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding