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See other PTGDS CNV Assays ›
Gene Symbol
PTGDS
Assay Reference Genome
Location

Chr.9:136980223 on build GRCh38
Cytoband
9q34.3
Assay ID Hs02329407_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 5730

Gene Name:

 prostaglandin D2 synthase

Gene Aliases:

 L-PGDS, LPGDS, PDS, PGD2, PGDS, PGDS2

Location:

 Chr.9:136977504-136981742 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PTGDS NM_000954.5 5 564 NP_000945.3
AA621632.1 3 264
AI659247.1
AK075333.1 5 564
AK312817.1 5 551
AY026356.1 5 489 AAK07679.1
BC005939.1 5 498 AAH05939.1
BG037037.1 5 568
BM686612.1 5 552
BT019921.1 5 489 AAV38724.1
BT019922.1 5 489 AAV38725.1
M61900.2 5 554

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv615997 Chr.9:136977199 - 136984376 on Build GRCh38 Loss LCNL1 PTGDS
nsv615991 Chr.9:136972675 - 137011907 on Build GRCh38 Loss LCNL1 ABCA2 C9orf142 PRR31 CLIC3 PTGDS
dgv13007n54 Chr.9:136966179 - 137173890 on Build GRCh38 Loss UAP1L1 LRRC26 ENTPD2 TMEM210 LCNL1 MIR3621 DPP7 ABCA2 LOC101930307 SAPCD2 FUT7 C9orf142 GRIN1 PRR31 CLIC3 MAN1B1-AS1 MAN1B1 C9orf139 NPDC1 PTGDS
nsv615993 Chr.9:136975638 - 136983246 on Build GRCh38 Gain LCNL1 PTGDS
nsv818738 Chr.9:136740043 - 137009585 on Build GRCh38 Gain LCNL1 CCDC183 RABL6 TMEM141 C9orf142 C8G MIR4479 CLIC3 LCN12 MIR4292 LCN10 PHPT1 MAMDC4 ABCA2 LCN8 LCN15 C9orf172 PRR31 MIR6722 LOC100128593 TRAF2 FBXW5 EDF1 CCDC183-AS1 LCN6 PTGDS
nsv524322 Chr.9:136795692 - 137482216 on Build GRCh38 Loss RNF208 DPP7 FAM166A CCDC183 RABL6 LOC101930307 SAPCD2 C8G EXD3 LCN12 MAN1B1 MIR7114 PHPT1 PNPLA7 RNF224 NDOR1 UAP1L1 ENTPD2 C9orf172 NOXA1 PRR31 C9orf173-AS1 CYSRT1 STPG3 EDF1 CCDC183-AS1 NPDC1 ANAPC2 LRRC26 TMEM210 LCNL1 MIR3621 TUBB4B C9orf142 MIR4479 CLIC3 TOR4A NELFB MAN1B1-AS1 MIR4292 TPRN MAMDC4 C9orf139 NRARP ENTPD8 ABCA2 SLC34A3 SSNA1 FUT7 GRIN1 TRAF2 FBXW5 NSMF TMEM203 PTGDS
nsv951206 Chr.9:136944849 - 137114548 on Build GRCh38 Deletion UAP1L1 ENTPD2 LCNL1 DPP7 ABCA2 LOC101930307 SAPCD2 FUT7 C9orf142 C8G PRR31 CLIC3 LCN12 MAN1B1-AS1 MAN1B1 C9orf139 NPDC1 PTGDS
nsv616002 Chr.9:136977855 - 136981118 on Build GRCh38 Loss PTGDS
nsv469918 Chr.9:136359865 - 137173890 on Build GRCh38 Loss SNORA17A PMPCA DPP7 CCDC183 NOTCH1 RABL6 LOC101930307 FAM69B SAPCD2 CARD9 C8G SNORA17B LCN12 MAN1B1 SEC16A EGFL7 PHPT1 NALT1 C9orf163 MIR126 UAP1L1 ENTPD2 LCN15 SDCCAG3 SNHG7 C9orf172 PRR31 MIR6722 SNAPC4 EDF1 DNLZ CCDC183-AS1 NPDC1 LCN6 LINC01451 LRRC26 TMEM210 LCNL1 MIR3621 TMEM141 C9orf142 MIR4479 CLIC3 MAN1B1-AS1 MIR4292 MIR4673 LCN10 MAMDC4 C9orf139 AGPAT2 ABCA2 MIR4674 LCN8 INPP5E FUT7 GRIN1 LOC100128593 TRAF2 FBXW5 HSPC324 PTGDS
esv2422220 Chr.9:136584135 - 137350098 on Build GRCh38 Deletion RNF208 SNORA17A DPP7 FAM166A CCDC183 RABL6 LOC101930307 FAM69B SAPCD2 C8G SNORA17B EXD3 LCN12 MAN1B1 EGFL7 PHPT1 RNF224 MIR126 NDOR1 UAP1L1 ENTPD2 LCN15 SNHG7 C9orf172 PRR31 MIR6722 C9orf173-AS1 CYSRT1 STPG3 EDF1 CCDC183-AS1 NPDC1 LCN6 LINC01451 ANAPC2 LRRC26 TMEM210 LCNL1 MIR3621 TUBB4B TMEM141 C9orf142 MIR4479 CLIC3 TOR4A NELFB MAN1B1-AS1 MIR4292 LCN10 TPRN MAMDC4 C9orf139 NRARP AGPAT2 ABCA2 LCN8 SLC34A3 SSNA1 FUT7 GRIN1 LOC100128593 TRAF2 FBXW5 HSPC324 TMEM203 PTGDS

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