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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2183953 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02345058_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 14 - Exon 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RGS11 MCRIP2 NPW SSTR5-AS1 HAGHL RHOT2 UNKL WASIR2 C16orf91 MRPL28 LOC107984876 KCTD5 PTX4 ARHGDIG CCDC154 TSC2 ABCA3 PRSS27 EME2 GNG13 CCDC78 RHBDF1 RAB26 PDPK1 WDR90 RAB40C MIR6768 GNPTG TMEM204 LOC105371047 MIR3178 SNHG19 NME3 CCNF CRAMP1 TBL3 FBXL16 PRSS29P SOX8 TPSAB1 NME4 HN1L MSLN SNORA78 TPSD1 STUB1 PGP LOC652276 CAPN15 LOC105371046 SNORA10 HBM MAPK8IP3 NHLRC4 LINC00254 RHBDL1 CASKIN1 PKD1 MIR662 MPG MSRB1 AMDHD2 NUBP2 NDUFB10 DNASE1L2 METTL26 TBC1D24 LOC729652 LMF1 FAHD1 PIGQ TPSB2 LOC100134368 CHTF18 MIR3177 IFT140 MLST8 BRICD5 MIR6511B1 FAM173A SNHG9 ABCA17P LOC105371049 HAGH GFER FAM234A LMF1-AS1 MIR5587 ERVK13-1 SNRNP25 NTN3 DDX11L10 MIR6767 HBQ1 MIR3176 AXIN1 LOC106660606 LOC100287175 WFIKKN1 RPL23AP5 LOC105371038 RPL3L BAIAP3 IGFALS CEMP1 MIR940 POLR3K SYNGR3 TMEM8A SNORD60 HS3ST6 MIR3677 ECI1 HBA2 CLCN7 E4F1 SNORA64 SPSB3 HBZ MIR3180-5 HBA1 PRR35 NARFL PDIA2 SLC9A3R2 SSTR5 NTHL1 C16orf59 NPRL3 PRR25 DECR2 LOC107987233 NOXO1 JMJD8 METRN MEIOB RAB11FIP3 RPUSD1 LOC105371184 ATP6V0C RNF151 RPS2 TELO2 LUC7L LINC00235 RNPS1 MIR4516 ZNF598 LOC101929280 UBE2I WDR24 C1QTNF8 CACNA1H TRAF7 MRPS34 MIR1225 FLJ42627 MIR6859-4 LOC105371045 MIR4717 TSR3 TPSG1
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss LOC106660606 CASKIN1 PKD1 NPW NOXO1 DNASE1L2 TSC2 ABCA3 MIR940 SYNGR3 RAB26 SNORD60 RNPS1 MIR4516 MIR3677 ZNF598 MLST8 ECI1 BRICD5 MIR6511B1 E4F1 LOC105371049 SNHG19 TRAF7 TBL3 MIR1225 GFER MIR3180-5 MIR4717 PGP SLC9A3R2 NTHL1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MIR4516 CASKIN1 PKD1 MLST8 ECI1 BRICD5 MIR6511B1 E4F1 LOC105371049 SNHG19 TRAF7 MIR1225 DNASE1L2 TSC2 MIR3180-5 PGP RAB26 SNORD60
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss LOC106660606 MIR3677 CASKIN1 MLST8 ECI1 BRICD5 E4F1 SNHG19 TRAF7 DNASE1L2 MIR940 PGP RAB26 SNORD60 RNPS1
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss MIR4516 CASKIN1 TSC2 PKD1 MIR3180-5 MIR6511B1 LOC105371049 SNHG19 TRAF7 RAB26 MIR1225 SNORD60
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss DNASE1L2 LOC106660606 MIR3677 CASKIN1 MLST8 ECI1 MIR940 BRICD5 E4F1 TRAF7 PGP RNPS1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC106660606 CASKIN1 PKD1 AMDHD2 DNASE1L2 ATP6V0C CEMP1 TSC2 ABCA3 MIR940 TBC1D24 LOC729652 RAB26 PDPK1 SNORD60 MIR6768 RNPS1 MIR4516 MIR3677 MLST8 ECI1 BRICD5 MIR6511B1 MIR3178 E4F1 ABCA17P LOC105371049 SNHG19 TRAF7 CCNF MIR1225 MIR3180-5 NTN3 MIR4717 MIR6767 PGP LOC652276 C16orf59
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion LOC106660606 MIR3677 CASKIN1 MLST8 ECI1 BRICD5 E4F1 SNHG19 TRAF7 DNASE1L2 ABCA3 MIR940 MIR4717 PGP RAB26 SNORD60 RNPS1

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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