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See other TYMS CNV Assays ›
Gene Symbol
TYMS
Assay Reference Genome
Location

Chr.18:658329 on build GRCh38
Cytoband
18p11.32
Assay ID Hs02357088_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7298

Gene Name:

 thymidylate synthetase

Gene Aliases:

 HST422, TMS, TS

Location:

 Chr.18:657604-673499 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TYMS NM_001071.2 NP_001062.1
AB062290.1 BAB93473.1
AB077207.1 BAB83676.1
AB077208.1 BAB83677.1
AK223372.1 BAD97092.1
AK292620.1
AK314140.1
BC002567.2 AAH02567.1
BC013919.1 AAH13919.1
BC083512.1 AAH83512.1
BT006811.1 AAP35457.1
X02308.1 CAA26178.1

Target Gene Details

Entrez Gene ID:

 494514

Gene Name:

 TYMS opposite strand

Gene Aliases:

 C18orf56

Location:

 Chr.18:649620-658340 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TYMSOS NM_001012716.2 NP_001012734.2
BC028301.1 AAH28301.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv576236 Chr.18:319176 - 794272 on Build GRCh38 Gain TYMSOS TYMS ENOSF1 CETN1 LOC105376854 COLEC12 CLUL1 YES1
esv3641503 Chr.18:640491 - 689131 on Build GRCh38 Gain TYMSOS TYMS ENOSF1 CLUL1
nsv576239 Chr.18:394946 - 712037 on Build GRCh38 Gain TYMSOS TYMS ENOSF1 CETN1 LOC105376854 COLEC12 CLUL1
esv3641497 Chr.18:551569 - 745897 on Build GRCh38 Gain TYMSOS TYMS ENOSF1 CETN1 CLUL1 YES1
nsv1060188 Chr.18:575087 - 863351 on Build GRCh38 Gain TYMSOS TYMS ENOSF1 CETN1 CLUL1 YES1
esv3893055 Chr.18:415105 - 743226 on Build GRCh38 Gain TYMSOS TYMS ENOSF1 CETN1 LOC105376854 COLEC12 CLUL1 YES1
nsv482935 Chr.18:10001 - 2900002 on Build GRCh38 Loss LOC101926997 LOC388456 TYMS ENOSF1 SMCHD1 ROCK1P1 MIR8078 NDC80 YES1 TYMSOS METTL4 ADCYAP1 THOC1 USP14 CBX3P2 CETN1 LOC105376854 COLEC12 CLUL1 EMILIN2 LINC00470
dgv5810n54 Chr.18:351004 - 2238246 on Build GRCh38 Gain LOC388456 TYMSOS TYMS ENOSF1 ADCYAP1 CETN1 LOC105376854 COLEC12 CLUL1 YES1 LINC00470
nsv576242 Chr.18:567127 - 841320 on Build GRCh38 Gain TYMSOS TYMS ENOSF1 CETN1 CLUL1 YES1
nsv528169 Chr.18:551688 - 2240220 on Build GRCh38 Loss LOC388456 TYMSOS TYMS ENOSF1 ADCYAP1 CETN1 CLUL1 YES1 LINC00470
dgv3307n100 Chr.18:469797 - 683607 on Build GRCh38 Gain TYMSOS TYMS ENOSF1 CETN1 LOC105376854 COLEC12 CLUL1
nsv833577 Chr.18:521331 - 725019 on Build GRCh38 Gain+Loss TYMSOS TYMS ENOSF1 CETN1 CLUL1 YES1
nsv576228 Chr.18:69836 - 1506323 on Build GRCh38 Loss LOC388456 TYMS ENOSF1 ROCK1P1 MIR8078 YES1 TYMSOS ADCYAP1 THOC1 USP14 CETN1 LOC105376854 COLEC12 CLUL1 LINC00470

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More Information


Additional Information:

For this assay, SNP(s) [rs72634355] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

methyltransferase

Gene Ontology Categories:

Function(s) Process(es)


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