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See other PHF1 CNV Assays ›
Gene Symbol
PHF1
Assay Reference Genome
Location

Chr.6:33412585 on build GRCh38
Cytoband
6p21.32
Assay ID Hs02360923_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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Online offer:
4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 5252

Gene Name:

 PHD finger protein 1

Gene Aliases:

 MTF2L2, PCL1, PHF2, TDRD19C, hPHF1

Location:

 Chr.6:33410751-33416453 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 4 - Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PHF1 NM_002636.4 NP_002627.1
NM_024165.2 NP_077084.1
NR_027692.1
XM_011514662.1 XP_011512964.1
XM_011514663.1 XP_011512965.1
XM_011514664.1 XP_011512966.1
XM_011514665.1 XP_011512967.1
XM_011514666.1 XP_011512968.1
XM_011514669.1 XP_011512971.1
XM_011514670.2 XP_011512972.1
XM_017010939.1 XP_016866428.1
AF029678.1 AAC52062.1
AF052205.1 AAC13273.1
AK225913.1
AK295412.1
AK316499.1
BC008834.2 AAH08834.1
DA065298.1
DA872118.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv830637 Chr.6:33361588 - 33542927 on Build GRCh38 Loss SYNGAP1 PHF1 ZBTB9 CUTA KIFC1 MIR5004
nsv830635 Chr.6:33270228 - 33446010 on Build GRCh38 Loss PHF1 DAXX B3GALT4 WDR46 RPS18 RGL2 ZBTB22 TAPBP MIR5004 MIR6873 SYNGAP1 VPS52 CUTA KIFC1 MIR6834 PFDN6
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion MIR1236 DAXX HSPA1L ABHD16A SNORD84 NOTCH4 TNXB MIR219A1 LY6G5B PRRC2A ATP6V1G2-DDX39B LY6G6E LOC100287329 KIFC1 SAPCD1-AS1 MCCD1 APOM ZBTB12 LOC101929163 HLA-DPA1 FKBPL RNF5 EHMT2 PRRT1 AGER SLC39A7 NELFE AIF1 LSM2 MSH5-SAPCD1 HLA-DRA C6orf48 EGFL8 LY6G5C TAP2 C6orf25 SKIV2L RPS18 RGL2 HLA-DMA MIR6873 LOC100294145 SYNGAP1 MIR6832 CYP21A2 BRD2 HLA-DOB C2-AS1 LY6G6D CSNK2B WDR46 HCG24 LY6G6F MIR5004 HCG26 LTA AGPAT1 DDAH2 SNORD117 PPT2 BTNL2 PSMB8-AS1 HLA-DOA GPANK1 HCP5 HLA-DRB5 HCG25 NCR3 CYP21A1P CFB COL11A2 BAG6 SNORD52 HLA-DRB1 CUTA PSMB8 HLA-DQB1 HLA-DQA2 HSD17B8 PFDN6 TNF MSH5 MIR4646 PPT2-EGFL8 STK19 LY6G6C ZBTB22 TAPBP PSMB9 HLA-DQA1 HLA-DPB2 TNXA PBX2 LST1 LOC102725068 NEU1 RING1 C6orf10 HSPA1B ATF6B MIR6721 VWA7 HLA-DMB MIR6833 PPP1R2P1 B3GALT4 LTB SNORD48 NFKBIL1 C2 HSPA1A SAPCD1 GPSM3 HLA-DQB2 VARS DXO ATP6V1G2 VPS52 ZBTB9 MICB C6orf47 DDX39B PHF1 C4B HLA-DRB6 HCG23 HLA-DQB1-AS1 CLIC1 C4A SLC44A4 DDX39B-AS1 SNORA38 TAP1 LOC100507547 HLA-DPB1 MIR3135B RXRB MIR6834
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion MIR1236 DAXX HSPA1L ABHD16A SNORD84 NOTCH4 TNXB MIR219A1 LY6G5B PRRC2A ATP6V1G2-DDX39B LY6G6E LOC100287329 KIFC1 SAPCD1-AS1 MCCD1 APOM ZBTB12 LOC101929163 HLA-DPA1 FKBPL RNF5 EHMT2 PRRT1 AGER SLC39A7 NELFE AIF1 LSM2 MSH5-SAPCD1 HLA-DRA C6orf48 EGFL8 LY6G5C TAP2 C6orf25 SKIV2L RPS18 RGL2 HLA-DMA MIR6873 LOC100294145 SYNGAP1 MIR6832 CYP21A2 BRD2 HLA-DOB C2-AS1 LY6G6D CSNK2B WDR46 HCG24 LY6G6F MIR5004 HCG26 LTA AGPAT1 DDAH2 SNORD117 PPT2 BTNL2 PSMB8-AS1 HLA-DOA GPANK1 HCP5 HLA-DRB5 HCG25 NCR3 CYP21A1P CFB COL11A2 BAG6 SNORD52 HLA-DRB1 CUTA PSMB8 HLA-DQB1 HLA-DQA2 HSD17B8 PFDN6 TNF MSH5 MIR4646 PPT2-EGFL8 STK19 LY6G6C ZBTB22 TAPBP PSMB9 HLA-DQA1 HLA-DPB2 TNXA PBX2 LST1 LOC102725068 NEU1 RING1 C6orf10 HSPA1B ATF6B MIR6721 VWA7 HLA-DMB MIR6833 PPP1R2P1 B3GALT4 LTB SNORD48 NFKBIL1 C2 HSPA1A SAPCD1 GPSM3 HLA-DQB2 VARS DXO ATP6V1G2 VPS52 ZBTB9 MICB C6orf47 DDX39B PHF1 C4B HLA-DRB6 HCG23 HLA-DQB1-AS1 CLIC1 C4A SLC44A4 DDX39B-AS1 SNORA38 TAP1 LOC100507547 HLA-DPB1 MIR3135B RXRB MIR6834
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion PSMB8-AS1 PPP1R2P1 HLA-DOA DAXX B3GALT4 TAP2 RPS18 RGL2 MIR219A1 HLA-DMA HCG25 MIR6873 LOC100294145 HLA-DQB2 SYNGAP1 COL11A2 VPS52 ZBTB9 BRD2 CUTA HLA-DOB PSMB8 HLA-DQB1 HLA-DQA2 KIFC1 HSD17B8 PFDN6 PHF1 HLA-DPA1 WDR46 HLA-DQB1-AS1 HCG24 ZBTB22 TAPBP PSMB9 HLA-DQA1 SLC39A7 HLA-DPB2 MIR5004 TAP1 HLA-DPB1 MIR3135B RXRB RING1 HLA-DMB MIR6834

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