Name: [Hs02360923_cn] [PHF1]
Creator: Thermo Fisher Scientific
Keywords: [PHF1] Assay, [PHD finger protein 1] Assay

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:	5252
Gene Name:	PHD finger protein 1
Gene Aliases:	MTF2L2, PCL1, PHF2, TDRD19C, hPHF1
Location:	Chr.6:33410751-33416453 on Build GRCh38
Assay Gene Location:	Overlaps Exon 4 - Intron 4

Gene Symbol	Transcript Accession	Protein ID
PHF1	NM_002636.4	NP_002627.1
	NM_024165.2	NP_077084.1
	NR_027692.1
	XM_011514662.1	XP_011512964.1
	XM_011514663.1	XP_011512965.1
	XM_011514664.1	XP_011512966.1
	XM_011514665.1	XP_011512967.1
	XM_011514666.1	XP_011512968.1
	XM_011514669.1	XP_011512971.1
	XM_011514670.2	XP_011512972.1
	XM_017010939.1	XP_016866428.1
	AF029678.1	AAC52062.1
	AF052205.1	AAC13273.1
	AK225913.1
	AK295412.1
	AK316499.1
	BC008834.2	AAH08834.1
	DA065298.1
	DA872118.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv830637	Chr.6:33361588 - 33542927 on Build GRCh38	Loss	KIFC1 PHF1 SYNGAP1 CUTA MIR5004 ZBTB9
nsv830635	Chr.6:33270228 - 33446010 on Build GRCh38	Loss	DAXX KIFC1 SYNGAP1 MIR6873 MIR6834 RPS18 TAPBP VPS52 MIR5004 PFDN6 PHF1 WDR46 RGL2 ZBTB22 CUTA B3GALT4
nsv1073969	Chr.6:31456422 - 33480523 on Build GRCh38	Deletion	HCG24 MICB FKBPL SAPCD1 PBX2 CYP21A1P PRRT1 C6orf25 BRD2 ZBTB9 RNF5 MIR3135B SNORD117 AIF1 HCP5 KIFC1 HSPA1B SNORD48 LOC100294145 TNF EHMT2 RING1 LOC102725068 TAP2 HLA-DMA NCR3 MIR5004 ATP6V1G2 MSH5 LY6G6D SAPCD1-AS1 ZBTB12 MIR219A1 PPT2-EGFL8 HLA-DPB1 TAP1 ATP6V1G2-DDX39B SNORD84 RGL2 BAG6 PSMB8-AS1 TNXA DXO CSNK2B CFB ATF6B PFDN6 NEU1 HLA-DOA B3GALT4 PRRC2A MCCD1 DDX39B-AS1 HLA-DQA2 MIR6873 HLA-DPB2 TAPBP LOC100507547 MSH5-SAPCD1 LY6G6F HLA-DQB1-AS1 PSMB8 DDAH2 HSPA1L HSD17B8 DAXX NOTCH4 HCG26 ABHD16A SNORD52 APOM BTNL2 LY6G5B HLA-DQA1 HLA-DRB6 VPS52 HLA-DRB1 AGPAT1 HLA-DMB LTB HLA-DRB5 HCG23 LOC100287329 C4B CUTA HLA-DQB1 LY6G6C LTA PPT2 SYNGAP1 GPSM3 HLA-DOB CLIC1 VARS C2 NFKBIL1 SLC44A4 HLA-DRA C6orf47 MIR4646 LST1 MIR6721 VWA7 RXRB NELFE STK19 MIR6834 COL11A2 LY6G6E RPS18 C6orf10 HCG25 GPANK1 LOC101929163 C2-AS1 SNORA38 MIR1236 CYP21A2 HSPA1A LY6G5C C6orf48 C4A MIR6832 MIR6833 PSMB9 EGFL8 SKIV2L HLA-DQB2 HLA-DPA1 PHF1 DDX39B PPP1R2P1 WDR46 SLC39A7 ZBTB22 LSM2 AGER TNXB
nsv1112900	Chr.6:31455323 - 33480423 on Build GRCh38	Deletion	HCG24 MICB FKBPL SAPCD1 PBX2 CYP21A1P PRRT1 C6orf25 BRD2 ZBTB9 RNF5 MIR3135B SNORD117 AIF1 HCP5 KIFC1 HSPA1B SNORD48 LOC100294145 TNF EHMT2 RING1 LOC102725068 TAP2 HLA-DMA NCR3 MIR5004 ATP6V1G2 MSH5 LY6G6D SAPCD1-AS1 ZBTB12 MIR219A1 PPT2-EGFL8 HLA-DPB1 TAP1 ATP6V1G2-DDX39B SNORD84 RGL2 BAG6 PSMB8-AS1 TNXA DXO CSNK2B CFB ATF6B PFDN6 NEU1 HLA-DOA B3GALT4 PRRC2A MCCD1 DDX39B-AS1 HLA-DQA2 MIR6873 HLA-DPB2 TAPBP LOC100507547 MSH5-SAPCD1 LY6G6F HLA-DQB1-AS1 PSMB8 DDAH2 HSPA1L HSD17B8 DAXX NOTCH4 HCG26 ABHD16A SNORD52 APOM BTNL2 LY6G5B HLA-DQA1 HLA-DRB6 VPS52 HLA-DRB1 AGPAT1 HLA-DMB LTB HLA-DRB5 HCG23 LOC100287329 C4B CUTA HLA-DQB1 LY6G6C LTA PPT2 SYNGAP1 GPSM3 HLA-DOB CLIC1 VARS C2 NFKBIL1 SLC44A4 HLA-DRA C6orf47 MIR4646 LST1 MIR6721 VWA7 RXRB NELFE STK19 MIR6834 COL11A2 LY6G6E RPS18 C6orf10 HCG25 GPANK1 LOC101929163 C2-AS1 SNORA38 MIR1236 CYP21A2 HSPA1A LY6G5C C6orf48 C4A MIR6832 MIR6833 PSMB9 EGFL8 SKIV2L HLA-DQB2 HLA-DPA1 PHF1 DDX39B PPP1R2P1 WDR46 SLC39A7 ZBTB22 LSM2 AGER TNXB
nsv1119076	Chr.6:32595823 - 33480623 on Build GRCh38	Deletion	DAXX HCG24 RXRB MIR6834 COL11A2 RPS18 HLA-DQA1 VPS52 BRD2 HLA-DMB ZBTB9 HCG25 PFDN6 HLA-DOA MIR3135B CUTA HLA-DQB1 B3GALT4 KIFC1 HLA-DQA2 SYNGAP1 MIR6873 LOC100294145 HLA-DOB PSMB9 RING1 HLA-DPB2 TAP2 TAPBP HLA-DMA HLA-DQB2 MIR5004 HLA-DPA1 PHF1 HLA-DQB1-AS1 PSMB8 MIR219A1 PPP1R2P1 HLA-DPB1 TAP1 WDR46 RGL2 SLC39A7 ZBTB22 HSD17B8 PSMB8-AS1