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See other LRRC56 CNV Assays ›
Gene Symbol
LRRC56
Assay Reference Genome
Location

Chr.11:540817 on build GRCh38
Cytoband
11p15.5
Assay ID Hs02374660_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 115399

Gene Name:

 leucine rich repeat containing 56

Gene Aliases:

 -

Location:

 Chr.11:518967-554916 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 8 - Intron 8
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LRRC56 NM_198075.3 NP_932341.1
XM_005252775.2 XP_005252832.1
XM_005252776.2 XP_005252833.1
XM_006718132.2 XP_006718195.1
XM_006718133.2 XP_006718196.1
XM_011519875.2 XP_011518177.1
XM_011519876.1 XP_011518178.1
XM_011519877.2 XP_011518179.1
XM_017017167.1 XP_016872656.1
XM_017017168.1 XP_016872657.1
AK024495.1 BAB15785.1
BC016439.1
BC035937.1 AAH35937.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv467634 Chr.11:511805 - 619789 on Build GRCh38 Loss LOC143666 IRF7 LMNTD2 CDHR5 MIR210HG HRAS LRRC56 MIR210 LOC101059906 PHRF1 RASSF7
nsv527327 Chr.11:295343 - 620599 on Build GRCh38 Loss LOC143666 PGGHG IFITM2 HRAS PHRF1 PTDSS2 IFITM1 RASSF7 ANO9 IRF7 LMNTD2 CDHR5 MIR210HG LRRC56 RNH1 MIR210 IFITM3 IFITM5 LOC101059906 SIGIRR B4GALNT4 PKP3
nsv951270 Chr.11:528401 - 628100 on Build GRCh38 Deletion LOC143666 IRF7 LMNTD2 CDHR5 MIR210HG HRAS LRRC56 MIR210 SCT LOC101059906 PHRF1 RASSF7
nsv469923 Chr.11:378188 - 1302334 on Build GRCh38 Loss MUC5B SCT PHRF1 DEAF1 TALDO1 MUC6 MUC2 PTDSS2 SLC25A22 ANO9 IRF7 CHID1 EPS8L2 LMNTD2 PIDD1 TSPAN4 TMEM80 LRRC56 RNH1 MIR210 POLR2L MIR6744 LOC101059906 B4GALNT4 CRACR2B TOLLIP LOC171391 RPLP2 AP2A2 LOC143666 MUC5AC HRAS SNORA52 DRD4 PNPLA2 PANO1 CEND1 CD151 RASSF7 CDHR5 MIR210HG PDDC1 LOC101927503 SIGIRR PKP3
esv2759794 Chr.11:409846 - 1336162 on Build GRCh38 Loss MUC5B SCT PHRF1 DEAF1 TALDO1 MUC6 MUC2 PTDSS2 SLC25A22 ANO9 IRF7 CHID1 EPS8L2 LMNTD2 PIDD1 TSPAN4 TMEM80 LRRC56 RNH1 MIR210 POLR2L MIR6744 LOC101059906 CRACR2B TOLLIP LOC171391 RPLP2 AP2A2 LOC143666 MUC5AC HRAS SNORA52 TOLLIP-AS1 DRD4 PNPLA2 PANO1 CEND1 CD151 RASSF7 CDHR5 MIR210HG PDDC1 LOC101927503 SIGIRR
nsv1039558 Chr.11:534242 - 672091 on Build GRCh38 Gain LOC143666 HRAS DRD4 SCT PHRF1 DEAF1 RASSF7 IRF7 LMNTD2 CDHR5 MIR210HG LRRC56 MIR210
nsv1053964 Chr.11:491334 - 692433 on Build GRCh38 Gain LOC143666 HRAS DRD4 SCT PHRF1 DEAF1 PTDSS2 RASSF7 IRF7 LMNTD2 CDHR5 MIR210HG LRRC56 RNH1 MIR210 LOC101059906
dgv182e199 Chr.11:349830 - 943372 on Build GRCh38 Deletion SCT PHRF1 DEAF1 TALDO1 PTDSS2 SLC25A22 ANO9 IRF7 CHID1 EPS8L2 LMNTD2 PIDD1 TSPAN4 TMEM80 LRRC56 RNH1 MIR210 POLR2L LOC101059906 B4GALNT4 CRACR2B LOC171391 RPLP2 AP2A2 LOC143666 HRAS SNORA52 DRD4 PNPLA2 PANO1 CEND1 CD151 RASSF7 CDHR5 MIR210HG PDDC1 SIGIRR PKP3
nsv1159791 Chr.11:461793 - 909492 on Build GRCh38 Deletion SCT PHRF1 DEAF1 TALDO1 PTDSS2 SLC25A22 IRF7 CHID1 EPS8L2 LMNTD2 PIDD1 TSPAN4 TMEM80 LRRC56 RNH1 MIR210 POLR2L LOC101059906 CRACR2B LOC171391 RPLP2 LOC143666 HRAS SNORA52 DRD4 PNPLA2 PANO1 CEND1 CD151 RASSF7 CDHR5 MIR210HG PDDC1
nsv552855 Chr.11:532923 - 545087 on Build GRCh38 Loss HRAS LRRC56

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More Information


Additional Information:

For this assay, SNP(s) [rs114689581] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

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