Hs02374660_cn

• Gene Symbol: LRRC56
• Assay Reference Genome Location: Chr.11:540817 on build GRCh38
• Cytoband: 11p15.5

Target Gene Details

• Entrez Gene ID: 115399
• Gene Name: leucine rich repeat containing 56
• Gene Aliases: -
• Location: Chr.11:518967-554916 on Build GRCh38
• Assay Gene Location: Overlaps Exon 8 - Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LRRC56	NM_198075.3			NP_932341.1
	XM_005252775.2			XP_005252832.1
	XM_005252776.2			XP_005252833.1
	XM_006718132.2			XP_006718195.1
	XM_006718133.2			XP_006718196.1
	XM_011519875.2			XP_011518177.1
	XM_011519876.1			XP_011518178.1
	XM_011519877.2			XP_011518179.1
	XM_017017167.1			XP_016872656.1
	XM_017017168.1			XP_016872657.1
	AK024495.1			BAB15785.1
	BC016439.1
	BC035937.1			AAH35937.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv552854	Chr.11:511805 - 619789 on Build GRCh38	Loss	LMNTD2 CDHR5 MIR210 MIR210HG HRAS LOC143666 RASSF7 IRF7 PHRF1 LOC101059906 LRRC56
nsv527327	Chr.11:295343 - 620599 on Build GRCh38	Loss	LMNTD2 CDHR5 B4GALNT4 MIR210HG PGGHG HRAS LOC143666 RASSF7 IRF7 SIGIRR PHRF1 LOC101059906 RNH1 IFITM5 ANO9 MIR210 PKP3 PTDSS2 IFITM1 IFITM2 LRRC56 IFITM3
nsv951270	Chr.11:528401 - 628100 on Build GRCh38	Deletion	LMNTD2 SCT CDHR5 MIR210 MIR210HG HRAS LOC143666 RASSF7 IRF7 PHRF1 LOC101059906 LRRC56
nsv469923	Chr.11:378188 - 1302334 on Build GRCh38	Loss	CDHR5 EPS8L2 B4GALNT4 MIR210HG HRAS RPLP2 PNPLA2 LOC143666 DRD4 MUC2 SIGIRR PANO1 LOC101059906 TSPAN4 ANO9 TMEM80 MIR6744 PTDSS2 PIDD1 POLR2L CRACR2B LRRC56 LMNTD2 SCT CEND1 TOLLIP TALDO1 RASSF7 MUC6 IRF7 MUC5B MUC5AC SLC25A22 PHRF1 SNORA52 LOC101927503 RNH1 CHID1 MIR210 LOC171391 PKP3 CD151 PDDC1 DEAF1 AP2A2
esv2759794	Chr.11:409846 - 1336162 on Build GRCh38	Loss	CDHR5 EPS8L2 MIR210HG HRAS RPLP2 PNPLA2 LOC143666 DRD4 MUC2 SIGIRR PANO1 LOC101059906 TSPAN4 ANO9 TMEM80 MIR6744 TOLLIP-AS1 PTDSS2 PIDD1 POLR2L CRACR2B LRRC56 LMNTD2 SCT CEND1 TOLLIP TALDO1 RASSF7 MUC6 IRF7 MUC5B MUC5AC SLC25A22 PHRF1 SNORA52 LOC101927503 RNH1 CHID1 MIR210 LOC171391 CD151 PDDC1 DEAF1 AP2A2
nsv1039558	Chr.11:534242 - 672091 on Build GRCh38	Gain	LMNTD2 SCT CDHR5 MIR210HG HRAS LOC143666 RASSF7 DRD4 IRF7 PHRF1 MIR210 DEAF1 LRRC56
dgv182e199	Chr.11:349830 - 943372 on Build GRCh38	Deletion	CDHR5 EPS8L2 B4GALNT4 MIR210HG HRAS RPLP2 PNPLA2 LOC143666 DRD4 SIGIRR PANO1 LOC101059906 TSPAN4 ANO9 TMEM80 PTDSS2 PIDD1 POLR2L CRACR2B LRRC56 LMNTD2 SCT CEND1 TALDO1 RASSF7 IRF7 SLC25A22 PHRF1 SNORA52 RNH1 CHID1 MIR210 LOC171391 PKP3 CD151 PDDC1 DEAF1 AP2A2
nsv1053964	Chr.11:491334 - 692433 on Build GRCh38	Gain	LMNTD2 SCT CDHR5 MIR210HG HRAS LOC143666 RASSF7 DRD4 IRF7 PHRF1 LOC101059906 RNH1 MIR210 PTDSS2 DEAF1 LRRC56
nsv1159791	Chr.11:461793 - 909492 on Build GRCh38	Deletion	CDHR5 EPS8L2 MIR210HG HRAS RPLP2 PNPLA2 LOC143666 DRD4 PANO1 LOC101059906 TSPAN4 TMEM80 PTDSS2 PIDD1 POLR2L CRACR2B LRRC56 LMNTD2 SCT CEND1 TALDO1 RASSF7 IRF7 SLC25A22 PHRF1 SNORA52 RNH1 CHID1 MIR210 LOC171391 CD151 PDDC1 DEAF1
nsv552855	Chr.11:532923 - 545087 on Build GRCh38	Loss	HRAS LRRC56

More Information

Additional Information:

For this assay, SNP(s) [rs114689581] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Non-exonic, DGV Variation