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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2183845 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02375652_cn
Size
Availability Made To Order
Catalog # 4400291
Price 475.00
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 15 - Exon 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR3176 E4F1 CHTF18 NPW BAIAP3 MIR5587 RHBDF1 HN1L MPG LOC105371049 NTN3 HAGH ATP6V0C TMEM204 SNORD60 FBXL16 AMDHD2 SNORA64 PIGQ SPSB3 SOX8 PKD1 RHBDL1 RAB11FIP3 NTHL1 LOC105371047 LOC100287175 LUC7L HBM LOC100134368 DDX11L10 AXIN1 RAB40C TRAF7 TPSD1 SSTR5 PRSS29P MIR6768 MIR940 CLCN7 RNF151 RGS11 LOC107987233 PDPK1 MIR3180-5 GNG13 DNASE1L2 RHOT2 HS3ST6 STUB1 LOC101929280 MIR1225 SNORA10 MRPL28 CACNA1H TPSG1 TBL3 PTX4 TMEM8A SLC9A3R2 HBQ1 FAM173A PDIA2 TSR3 MRPS34 METTL26 WFIKKN1 PRR35 IFT140 CCDC154 FAM234A SYNGR3 MEIOB RPS2 IGFALS HBA1 SNHG19 MLST8 SNRNP25 MCRIP2 C16orf59 JMJD8 PRSS27 CRAMP1 UBE2I TPSAB1 MSRB1 CAPN15 PGP C1QTNF8 METRN NARFL LOC105371038 MIR3178 GFER RPUSD1 WDR90 POLR3K GNPTG C16orf91 HBA2 WASIR2 LOC107984876 HBZ SSTR5-AS1 NME4 NME3 NUBP2 LOC106660606 MIR6859-4 LOC729652 ARHGDIG RPL23AP5 ABCA17P TELO2 ECI1 BRICD5 CCNF PRR25 MIR6767 FAHD1 NPRL3 MIR662 NOXO1 MAPK8IP3 LOC105371045 UNKL RNPS1 LOC105371184 SNHG9 NDUFB10 NHLRC4 RPL3L LMF1-AS1 ERVK13-1 LOC105371046 TSC2 LOC652276 MIR6511B1 LMF1 EME2 HAGHL FLJ42627 TPSB2 TBC1D24 ZNF598 DECR2 KCTD5 RAB26 LINC00235 SNORA78 ABCA3 MIR3177 MIR4516 CASKIN1 WDR24 MIR3677 CCDC78 LINC00254 MIR4717 CEMP1 MSLN
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss DNASE1L2 E4F1 PGP NPW NOXO1 MIR1225 RNPS1 TBL3 GFER SLC9A3R2 LOC105371049 TSC2 SNORD60 MIR6511B1 ZNF598 RAB26 PKD1 LOC106660606 NTHL1 SYNGR3 ABCA3 SNHG19 MIR4516 MLST8 TRAF7 MIR940 CASKIN1 MIR3677 ECI1 MIR3180-5 MIR4717 BRICD5
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss DNASE1L2 RAB26 PKD1 E4F1 PGP MIR1225 SNHG19 MIR4516 MLST8 TRAF7 CASKIN1 LOC105371049 TSC2 SNORD60 ECI1 MIR6511B1 MIR3180-5 BRICD5
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss DNASE1L2 RAB26 E4F1 PGP LOC106660606 RNPS1 SNHG19 MLST8 TRAF7 MIR940 CASKIN1 SNORD60 MIR3677 ECI1 BRICD5
nsv457349 Chr.16:2055054 - 2200730 on Build GRCh38 Loss TRAF7 RAB26 PKD1 CASKIN1 LOC105371049 TSC2 SNORD60 MIR6511B1 MIR3180-5 MIR1225 SNHG19 MIR4516
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss TRAF7 DNASE1L2 E4F1 MIR940 PGP CASKIN1 LOC106660606 MIR3677 ECI1 RNPS1 BRICD5 MLST8
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain DNASE1L2 CCNF E4F1 PGP MIR6767 MIR1225 RNPS1 MIR3178 LOC105371049 NTN3 TSC2 ATP6V0C SNORD60 LOC652276 AMDHD2 MIR6511B1 TBC1D24 RAB26 PKD1 LOC106660606 LOC729652 ABCA3 ABCA17P SNHG19 MIR4516 MLST8 TRAF7 MIR6768 MIR940 C16orf59 CASKIN1 MIR3677 PDPK1 ECI1 MIR3180-5 MIR4717 CEMP1 BRICD5
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion DNASE1L2 RAB26 E4F1 PGP LOC106660606 ABCA3 RNPS1 SNHG19 MLST8 TRAF7 MIR940 CASKIN1 SNORD60 MIR3677 ECI1 MIR4717 BRICD5

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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