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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2183845 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02375652_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 15 - Exon 15
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication RGS11 MIR6859-4 PGP LOC101929280 TMEM204 CASKIN1 RHBDF1 FLJ42627 PRSS27 WDR90 TSC2 LOC105371049 PKD1 SLC9A3R2 PRSS29P CLCN7 MIR3180-5 ABCA3 TSR3 CHTF18 WDR24 SNORA78 NARFL MIR940 CAPN15 ABCA17P CCNF RHBDL1 ECI1 C16orf59 WFIKKN1 SPSB3 NME4 BAIAP3 AMDHD2 MIR4516 TPSB2 PRR35 TRAF7 BRICD5 LOC105371045 HBA1 FAM173A HBA2 RAB11FIP3 MRPL28 SSTR5 NTN3 MIR3176 GNG13 MIR6767 IFT140 FBXL16 DNASE1L2 KCTD5 WASIR2 HS3ST6 NPRL3 LOC107984876 RPL3L LOC100287175 NTHL1 MPG SNRNP25 NHLRC4 SNORA10 GFER MSLN STUB1 GNPTG RNF151 MEIOB RHOT2 RPUSD1 NDUFB10 LOC105371038 TBL3 MIR3677 DECR2 LOC105371046 CCDC154 POLR3K HAGH CACNA1H LUC7L ATP6V0C CRAMP1 MIR662 MSRB1 ERVK13-1 PDIA2 TPSAB1 RAB40C C1QTNF8 MCRIP2 MIR6511B1 NUBP2 FAM234A MIR5587 ARHGDIG LOC729652 SNORD60 AXIN1 RAB26 PTX4 NOXO1 PDPK1 TMEM8A LOC105371047 MIR1225 MIR6768 LOC107987233 LOC105371184 NME3 SOX8 MIR4717 LMF1 CCDC78 LINC00235 MAPK8IP3 CEMP1 HBZ NPW METRN ZNF598 HBQ1 SSTR5-AS1 TBC1D24 MRPS34 JMJD8 TPSG1 MLST8 TPSD1 LOC100134368 TELO2 LOC106660606 SNORA64 EME2 HAGHL UBE2I C16orf91 METTL26 HBM FAHD1 LOC652276 MIR3178 IGFALS RPL23AP5 MIR3177 RPS2 DDX11L10 SYNGR3 PIGQ LINC00254 E4F1 SNHG9 RNPS1 HN1L LMF1-AS1 PRR25 UNKL SNHG19
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss PGP CASKIN1 MLST8 DNASE1L2 TSC2 MIR6511B1 LOC105371049 PKD1 SLC9A3R2 SNORD60 MIR3180-5 NTHL1 RAB26 NOXO1 SYNGR3 GFER ECI1 E4F1 MIR1225 RNPS1 MIR4516 TRAF7 BRICD5 TBL3 NPW SNHG19 ZNF598
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss RAB26 PGP CASKIN1 ECI1 E4F1 MLST8 DNASE1L2 MIR1225 MIR4516 TSC2 MIR6511B1 TRAF7 BRICD5 LOC105371049 PKD1 SNORD60 SNHG19 MIR3180-5
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss RAB26 PGP MIR940 CASKIN1 ECI1 E4F1 MLST8 DNASE1L2 RNPS1 LOC106660606 TRAF7 BRICD5 MIR3677 SNORD60 SNHG19
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss RAB26 MIR4516 TSC2 MIR6511B1 TRAF7 LOC105371049 PKD1 CASKIN1 SNORD60 SNHG19 MIR1225 MIR3180-5
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain TBC1D24 PGP ATP6V0C NTN3 CASKIN1 MIR6767 MLST8 DNASE1L2 LOC106660606 TSC2 MIR6511B1 LOC105371049 PKD1 LOC729652 SNORD60 MIR3180-5 ABCA3 RAB26 LOC652276 MIR3178 PDPK1 MIR940 ABCA17P CCNF ECI1 C16orf59 E4F1 MIR1225 MIR6768 RNPS1 AMDHD2 MIR4717 MIR4516 TRAF7 BRICD5 CEMP1 MIR3677 SNHG19
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss RNPS1 LOC106660606 PGP TRAF7 BRICD5 MIR940 MIR3677 CASKIN1 ECI1 E4F1 MLST8 DNASE1L2
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion ABCA3 RAB26 PGP MIR940 CASKIN1 ECI1 E4F1 MLST8 DNASE1L2 RNPS1 MIR4717 LOC106660606 TRAF7 BRICD5 MIR3677 SNORD60 SNHG19

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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