Genomic Map
Back To TopAssay Details
Target Gene Details
Entrez Gene ID: | 2972 |
Gene Name: | BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit |
Gene Aliases: |
BRF, BRF-1, CFDS, GTF3B, HEL-S-76p, TAF3B2, TAF3C, TAFIII90, TF3B90, TFIIIB90, hBRF |
Location: |
Chr.14:105209286-105315577 on Build GRCh38 |
Assay Gene Location: | Within Exon 22 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| BRF1 | NM_001242786.1 | 18 | 2543 | NP_001229715.1 |
| NM_001242787.1 | 18 | 2477 | NP_001229716.1 | |
| NM_001242788.1 | 17 | 2687 | NP_001229717.1 | |
| NM_001242789.1 | 13 | 1967 | NP_001229718.1 | |
| NM_001519.3 | 18 | 2768 | NP_001510.2 | |
| NM_145685.2 | 14 | 2676 | NP_663718.1 | |
| XM_005267561.3 | 18 | 2787 | XP_005267618.1 | |
| XM_005267563.3 | 14 | 3480 | XP_005267620.1 | |
| XM_006720123.2 | 13 | 2908 | XP_006720186.1 | |
| XM_011536673.1 | 17 | 2640 | XP_011534975.1 | |
| XM_011536674.1 | 14 | 3058 | XP_011534976.1 | |
| AJ297406.1 | CAC04512.1 | |||
| AJ297407.1 | 14 | 2684 | CAC04513.1 | |
| AK096471.1 | 13 | 1967 | ||
| AK124665.1 | 8 | 1832 | ||
| AK125024.1 | 5 | 2282 | BAC86024.1 | |
| AK126499.1 | 1 | 2777 | ||
| BC071637.1 | 13 | 1832 | AAH71637.1 | |
| BC086856.1 | 17 | 2420 | AAH86856.1 | |
| BC103859.1 | AAI03860.1 | |||
| BC103860.2 | AAI03861.1 | |||
| BC103861.2 | AAI03862.1 | |||
| BC133655.1 | ||||
| U28838.1 | 18 | 2765 | AAC50170.1 | |
| U75276.1 | 18 | 2472 | AAB38876.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv1439 | Chr.14:105210131 - 105247067 on Build GRCh38 | Insertion |
 BRF1
|
| nsv566186 | Chr.14:105209364 - 105312968 on Build GRCh38 | Loss |
BTBD6
PACS2
BRF1
|
| dgv267n27 | Chr.14:105149311 - 105219528 on Build GRCh38 | Loss |
JAG2
NUDT14
BRF1
MIR6765
|
| nsv566185 | Chr.14:105194429 - 105219528 on Build GRCh38 | Loss |
BRF1
|
| esv2760014 | Chr.14:105047009 - 105483089 on Build GRCh38 | Loss |
JAG2
BTBD6
LOC102723354
PACS2
LOC100507437
TEX22
MTA1
NUDT14
CRIP2
GPR132
BRF1
MIR6765
|
| nsv470679 | Chr.14:105124547 - 105605978 on Build GRCh38 | Loss |
CRIP1
PACS2
LOC100507437
TEX22
C14orf80
NUDT14
LOC105370697
CRIP2
BRF1
JAG2
BTBD6
TMEM121
MTA1
IGH
IGHA2
MIR6765
|
| nsv510651 | Chr.14:105190545 - 105258818 on Build GRCh38 | Deletion |
BTBD6
BRF1
|
| nsv9175 | Chr.14:105030172 - 105222604 on Build GRCh38 | Gain |
JAG2
LOC102723354
NUDT14
GPR132
BRF1
MIR6765
|
| nsv952279 | Chr.14:105136864 - 105237863 on Build GRCh38 | Deletion |
JAG2
NUDT14
BRF1
MIR6765
|
| nsv1054574 | Chr.14:103210111 - 105365114 on Build GRCh38 | Loss |
MIR203A
LOC101929634
ZFYVE21
LINC00638
PACS2
AHNAK2
C14orf180
KIF26A
CKB
SIVA1
LOC388022
LINC00637
BRF1
AKT1
EIF5
C14orf2
LOC102723354
CDCA4
SNORA28
ADSSL1
LOC105370691
CEP170B
TMEM179
PLD4
RD3L
MIR6765
BAG5
INF2
LOC105378183
ASPG
LOC105370687
MIR4710
APOPT1
KLC1
NUDT14
MIR203B
GPR132
TDRD9
ZBTB42
LOC107984648
JAG2
BTBD6
PPP1R13B
LOC105370708
XRCC3
MARK3
C14orf79
TRMT61A
|
| nsv1052190 | Chr.14:104957424 - 105256316 on Build GRCh38 | Gain |
JAG2
BTBD6
LOC102723354
CDCA4
AHNAK2
NUDT14
GPR132
C14orf79
BRF1
MIR6765
|
| nsv456458 | Chr.14:104969312 - 105223755 on Build GRCh38 | Loss |
JAG2
LOC102723354
CDCA4
AHNAK2
NUDT14
GPR132
C14orf79
BRF1
MIR6765
|
| nsv517055 | Chr.14:105136282 - 106779068 on Build GRCh38 | Gain+Loss |
ADAM6
MIR8071-2
IGHM
IGHD
PACS2
IGHG2
TEX22
C14orf80
ELK2AP
LOC105370697
CRIP2
IGHV4-31
BRF1
LOC107987211
IGHV3-41
LINC00226
IGHV3-23
IGHG1
MIR6765
CRIP1
IGHV3-69-1
IGHG3
MIR4539
LOC100507437
MIR8071-1
LINC00221
IGHV1-69
NUDT14
JAG2
BTBD6
KIAA0125
TMEM121
IGHA1
IGHG4
IGHV3-30
MIR4507
MTA1
IGHV4-55
MIR4537
IGHV3-71
IGHV3-48
IGH
IGHA2
MIR4538
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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