Hs02408499_cn

• Gene Symbol: NUBP2
• Assay Reference Genome Location: Chr.16:1787997 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 10101
• Gene Name: nucleotide binding protein 2
• Gene Aliases: CFD1, NBP 2, NUBP1
• Location: Chr.16:1782923-1789191 on Build GRCh38
• Assay Gene Location: Overlaps Exon 8 - Intron 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
NUBP2	NM_001284501.1			NP_001271430.1
	NM_001284502.1			NP_001271431.1
	NM_012225.3			NP_036357.1
	NR_104318.1
	XM_005255027.2			XP_005255084.1
	XM_005255030.1			XP_005255087.1
	XM_011522338.2			XP_011520640.1
	XM_017022831.1			XP_016878320.1
	XM_017022832.1			XP_016878321.1
	AF118394.1			AAD45242.1
	AK001023.1			BAA91471.1
	AK093593.1
	AK300696.1
	AK315611.1
	BC002768.2			AAH02768.1
	BC008005.1			AAH08005.1
	BI196883.1
	BU189242.1
	BX446436.2
	BX648907.1
	Z36821.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv457335	Chr.16:1729694 - 1789022 on Build GRCh38	Loss	NME3 MIR3177 MAPK8IP3 EME2 MRPS34 SPSB3 NUBP2
esv2422427	Chr.16:10001 - 2723164 on Build GRCh38	Duplication	CACNA1H LMF1-AS1 CCDC154 STUB1 NPW TMEM204 MIR5587 DECR2 METTL26 HAGH PTX4 ERVK13-1 HBZ RAB26 LOC107984876 TPSD1 WASIR2 ECI1 LUC7L CRAMP1 MIR4717 FLJ42627 RAB11FIP3 BRICD5 SSTR5 RAB40C TRAF7 SNHG9 CHTF18 MPG C1QTNF8 PRR35 IFT140 HN1L LOC729652 MIR6768 CAPN15 MIR6767 SYNGR3 SNORD60 MCRIP2 PGP JMJD8 KCTD5 RGS11 AMDHD2 SSTR5-AS1 PRR25 CASKIN1 HAGHL HBA2 PDIA2 MIR1225 MIR6859-4 MIR4516 NTHL1 ATP6V0C TPSB2 HS3ST6 IGFALS C16orf91 FAM173A RPL3L RHOT2 LOC105371047 PKD1 LOC100134368 FAHD1 ABCA17P LOC105371184 MIR3177 CEMP1 LOC106660606 RPL23AP5 LOC652276 NDUFB10 NARFL LMF1 ABCA3 UNKL MAPK8IP3 MRPS34 LOC107987233 SNORA10 SNHG19 NTN3 ZNF598 TBC1D24 TELO2 GNG13 MIR6511B1 MRPL28 PDPK1 ARHGDIG MIR662 DDX11L10 SNORA78 MLST8 NHLRC4 LOC100287175 LINC00235 EME2 MIR3677 MSLN CCNF FBXL16 E4F1 TPSAB1 C16orf59 MIR3176 RHBDL1 SNORA64 CLCN7 POLR3K LOC105371046 SNRNP25 RHBDF1 LOC101929280 MIR3180-5 TSC2 GFER HBQ1 WFIKKN1 NME4 MEIOB WDR90 SOX8 NPRL3 NOXO1 UBE2I LOC105371038 METRN MSRB1 MIR940 LOC105371049 CCDC78 NME3 PIGQ HBA1 TPSG1 RPS2 HBM RPUSD1 PRSS29P PRSS27 LOC105371045 MIR3178 GNPTG FAM234A TSR3 SLC9A3R2 AXIN1 TBL3 RNF151 TMEM8A RNPS1 DNASE1L2 SPSB3 BAIAP3 LINC00254 NUBP2 WDR24
nsv571172	Chr.16:1764390 - 1817039 on Build GRCh38	Loss	NME3 MAPK8IP3 EME2 MRPS34 SPSB3 HAGH IGFALS NUBP2
nsv1160328	Chr.16:1704619 - 1797867 on Build GRCh38	Deletion	NME3 MIR3177 MAPK8IP3 EME2 MRPS34 SPSB3 IGFALS NUBP2
nsv571171	Chr.16:1757779 - 1804539 on Build GRCh38	Gain+Loss	NME3 MAPK8IP3 EME2 MRPS34 SPSB3 IGFALS NUBP2
nsv1042986	Chr.16:1784723 - 1866102 on Build GRCh38	Loss	MEIOB FAHD1 HAGH IGFALS NUBP2
dgv4856n54	Chr.16:1600945 - 1813519 on Build GRCh38	Loss	NME3 LOC105371046 MAPK8IP3 CRAMP1 EME2 MRPS34 HAGH IGFALS MIR3177 SPSB3 IFT140 NUBP2 HN1L
nsv471069	Chr.16:1754356 - 1791032 on Build GRCh38	Loss	NME3 MAPK8IP3 EME2 MRPS34 SPSB3 IGFALS NUBP2
nsv1051692	Chr.16:1505070 - 1866102 on Build GRCh38	Loss	NME3 LOC105371046 TMEM204 MAPK8IP3 CRAMP1 EME2 MRPS34 HAGH IGFALS LOC105371047 MEIOB FAHD1 MIR3177 TELO2 SPSB3 IFT140 NUBP2 HN1L
nsv827500	Chr.16:1761258 - 1795126 on Build GRCh38	Gain	NME3 MAPK8IP3 EME2 MRPS34 SPSB3 IGFALS NUBP2
nsv518641	Chr.16:1645775 - 1835631 on Build GRCh38	Loss	NME3 MAPK8IP3 CRAMP1 EME2 MRPS34 HAGH IGFALS MEIOB FAHD1 MIR3177 SPSB3 NUBP2 HN1L
nsv952900	Chr.16:1724500 - 1827999 on Build GRCh38	Deletion	NME3 FAHD1 MIR3177 MAPK8IP3 EME2 MRPS34 SPSB3 HAGH IGFALS NUBP2
nsv571170	Chr.16:1752231 - 1791032 on Build GRCh38	Loss	NME3 MAPK8IP3 EME2 MRPS34 SPSB3 IGFALS NUBP2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

iron-sulfur cluster assembly
cell projection organization

Function(s)

nucleotide binding
protein binding
ATP binding
metal ion binding
4 iron, 4 sulfur cluster binding