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See other TNFRSF4 CNV Assays ›
Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1213999 on build GRCh38
Cytoband
1p36.33
Assay ID Hs02418235_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 NP_003318.1
XM_011542075.2 XP_011540377.1
XM_017002231.1 XP_016857720.1
XM_017002232.1 XP_016857721.1
BC105070.1 AAI05071.1
BC105072.1 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss PLEKHN1 MMP23B TAS1R3 MORN1 SCNN1D OR4F29 TNFRSF4 WASH7P RNF223 OR4F5 ATAD3A GNB1 SDF4 GABRD LOC100506504 LOC100287934 SSU72 CDK11B MIR200A MIR6859-2 ISG15 KLHL17 UBE2J2 FAAP20 MIB2 SKI SLC35E2 FAM138A MTND1P23 CCNL2 LINC01342 MTND2P28 LOC105378949 FAM41C LOC105378592 AURKAIP1 LOC100132287 AGRN TMEM52 LOC100129534 LOC100133331 ATAD3B MIR6723 MIR6859-1 LOC107985728 TMEM240 CALML6 MXRA8 VWA1 LOC148413 FNDC10 LOC107985729 PERM1 LINC01128 HES4 LOC100288175 OR4F16 LINC00115 LOC729737 SLC35E2B LOC100134822 MIR6726 NADK LOC102725121 PUSL1 SAMD11 LOC105378948 TNFRSF18 LOC100288069 FAM132A MIR1302-2 CPTP CPSF3L MMP23A NOC2L ACAP3 LOC101928626 DDX11L1 LOC100130417 MIR6808 TTLL10-AS1 MIR200B ATAD3C LOC105378591 LOC105378589 LOC105378947 LOC107984841 MIR429 FAM87B B3GALT6 TMEM88B CFAP74 MRPL20 LOC102724312 ANKRD65 CDK11A TTLL10 DVL1 C1orf159 MIR6727 LOC284600 PRKCZ
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LINC01342 MIR200A TTLL10-AS1 MIR200B LOC105378948 SCNN1D TNFRSF18 TTLL10 TNFRSF4 FAM132A UBE2J2 C1orf159 RNF223 SDF4 MIR429 B3GALT6
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss LINC01342 MIR200A TTLL10-AS1 MIR200B SCNN1D TNFRSF18 TTLL10 TNFRSF4 FAM132A UBE2J2 C1orf159 RNF223 SDF4 MIR429 ACAP3 B3GALT6 MIR6726
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 TNFRSF4 SDF4 TTLL10-AS1 TNFRSF18 B3GALT6
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF4 TNFRSF18
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain PLEKHN1 LOC100130417 LINC01342 TTLL10-AS1 MIR200B HES4 FAM41C LOC100288175 TNFRSF4 AGRN RNF223 SDF4 MIR429 LOC107985728 MIR200A SAMD11 LOC105378948 TNFRSF18 ISG15 KLHL17 TTLL10 C1orf159 LOC284600 NOC2L PERM1
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TAS1R3 LINC01342 TTLL10-AS1 MIR200B SCNN1D LOC100288175 TNFRSF4 AGRN RNF223 SDF4 MIR429 B3GALT6 MIR6726 PUSL1 MIR200A LOC105378948 TNFRSF18 TTLL10 FAM132A CPTP UBE2J2 C1orf159 CPSF3L MIR6727 ACAP3
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PLEKHN1 MMP23B LINC01128 TAS1R3 SCNN1D HES4 LOC100288175 TNFRSF4 LINC00115 RNF223 ATAD3A SLC35E2B SDF4 MIR6726 NADK LOC100287934 SSU72 PUSL1 CDK11B MIR200A SAMD11 LOC105378948 TNFRSF18 ISG15 KLHL17 LOC100288069 FAM132A CPTP UBE2J2 MIB2 SLC35E2 CPSF3L MMP23A NOC2L ACAP3 LOC100130417 CCNL2 MIR6808 LINC01342 TTLL10-AS1 MIR200B ATAD3C FAM41C AURKAIP1 AGRN MIR429 FAM87B B3GALT6 TMEM88B MRPL20 ATAD3B LOC102724312 LOC107985728 ANKRD65 CDK11A TMEM240 MXRA8 TTLL10 VWA1 LOC148413 FNDC10 DVL1 C1orf159 MIR6727 LOC284600 LOC107985729 PERM1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss PLEKHN1 LINC01128 LOC100130417 LINC01342 TTLL10-AS1 MIR200B HES4 FAM41C LOC100288175 TNFRSF4 AGRN LINC00115 RNF223 SDF4 MIR429 FAM87B B3GALT6 LOC107985728 MIR200A SAMD11 LOC105378948 TNFRSF18 ISG15 KLHL17 TTLL10 FAM132A UBE2J2 C1orf159 LOC284600 NOC2L PERM1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MMP23B TAS1R3 CCNL2 MIR6808 LINC01342 TTLL10-AS1 MIR200B ATAD3C SCNN1D AURKAIP1 TNFRSF4 ATAD3A SDF4 MIR429 B3GALT6 MIR6726 TMEM88B MRPL20 ATAD3B SSU72 PUSL1 LOC102724312 ANKRD65 CDK11B TMEM240 MIR200A TNFRSF18 MXRA8 TTLL10 VWA1 LOC148413 FNDC10 FAM132A CPTP UBE2J2 DVL1 C1orf159 MIB2 CPSF3L MIR6727 LOC107985729 ACAP3
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain PLEKHN1 LOC100130417 TAS1R3 CCNL2 MIR6808 LINC01342 TTLL10-AS1 MIR200B SCNN1D HES4 LOC100288175 AURKAIP1 TNFRSF4 AGRN RNF223 SDF4 MIR429 B3GALT6 MIR6726 TMEM88B MRPL20 PUSL1 LOC107985728 ANKRD65 MIR200A SAMD11 LOC105378948 TNFRSF18 MXRA8 ISG15 KLHL17 TTLL10 LOC148413 FAM132A CPTP UBE2J2 DVL1 C1orf159 CPSF3L MIR6727 LOC284600 NOC2L ACAP3 PERM1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion PLEKHN1 LINC01342 MIR200A SAMD11 TTLL10-AS1 MIR200B LOC105378948 TNFRSF18 HES4 ISG15 KLHL17 TTLL10 LOC100288175 TNFRSF4 AGRN C1orf159 RNF223 SDF4 MIR429 NOC2L PERM1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain PUSL1 MIR200A TTLL10-AS1 MIR200B SCNN1D TNFRSF18 TTLL10 TNFRSF4 FAM132A UBE2J2 CPSF3L MIR6727 SDF4 MIR429 ACAP3 B3GALT6 MIR6726

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