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See other ATP2A1 CNV Assays ›
Gene Symbol
ATP2A1
Assay Reference Genome
Location

Chr.16:28898042 on build GRCh38
Cytoband
16p11.2
Assay ID Hs02424774_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 487

Gene Name:

 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1

Gene Aliases:

 ATP2A, SERCA1

Location:

 Chr.16:28878488-28904509 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP2A1 NM_001286075.1 11 1295 NP_001273004.1
NM_004320.4 13 1646 NP_004311.1
NM_173201.3 13 1646 NP_775293.1
AK128456.1 11 1285
AK291314.1 13 1575
BC037354.1 13 1574 AAH37354.1
BX537389.1 13 1642 CAD97631.1
BX537784.1 13 1644 CAD97841.1
BX647365.1 13 1642
BX647366.1 13 1638
BX647367.1 13 1646
BX647368.1 6 684
BX648544.1 13 1643
BX649072.1 13 1634

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4987n54 Chr.16:28824884 - 29032129 on Build GRCh38 Gain SH2B1 MIR4517 RABEP2 SPNS1 ATXN2L ATP2A1 LAT NFATC2IP MIR4721 ATP2A1-AS1 TUFM CD19
esv3892826 Chr.16:28814728 - 29032129 on Build GRCh38 Gain+Loss SH2B1 MIR4517 RABEP2 SPNS1 ATXN2L ATP2A1 LAT NFATC2IP MIR4721 ATP2A1-AS1 TUFM CD19
esv3638349 Chr.16:28860611 - 28907894 on Build GRCh38 Gain SH2B1 RABEP2 ATP2A1 ATP2A1-AS1
esv2758640 Chr.16:28163817 - 29139232 on Build GRCh38 Gain+Loss IL27 SH2B1 SULT1A2 SBK1 SPNS1 NUPR1 NPIP NPIPB9 RABEP2 NPIPB8 LOC101928215 EIF3CL ATP2A1 ATP2A1-AS1 TUFM MIR4517 EIF3C CLN3 SGF29 MIR6862-2 XPO6 NPIPB6 ATXN2L APOBR RRN3P2 SULT1A1 LAT MIR6862-1 NFATC2IP MIR4721 CD19
nsv518648 Chr.16:28826194 - 29032129 on Build GRCh38 Loss SH2B1 MIR4517 RABEP2 SPNS1 ATXN2L ATP2A1 LAT NFATC2IP MIR4721 ATP2A1-AS1 TUFM CD19
nsv1059555 Chr.16:28373144 - 29195838 on Build GRCh38 Gain IL27 SH2B1 SULT1A2 SPNS1 NUPR1 NPIP NPIPB9 RABEP2 NPIPB8 LOC101928215 EIF3CL ATP2A1 ATP2A1-AS1 TUFM MIR4517 EIF3C LOC107984832 CLN3 SGF29 MIR6862-2 ATXN2L APOBR RRN3P2 SULT1A1 LAT MIR6862-1 NFATC2IP MIR4721 CD19
dgv2831n100 Chr.16:28812594 - 29032542 on Build GRCh38 Gain SH2B1 MIR4517 RABEP2 SPNS1 ATXN2L ATP2A1 LAT NFATC2IP MIR4721 ATP2A1-AS1 TUFM CD19
esv3570454 Chr.16:28799004 - 29032129 on Build GRCh38 Gain SH2B1 MIR4517 RABEP2 SPNS1 ATXN2L ATP2A1 LAT NFATC2IP MIR4721 ATP2A1-AS1 TUFM CD19
nsv571805 Chr.16:28824174 - 29032129 on Build GRCh38 Loss SH2B1 MIR4517 RABEP2 SPNS1 ATXN2L ATP2A1 LAT NFATC2IP MIR4721 ATP2A1-AS1 TUFM CD19
dgv2830n100 Chr.16:28620264 - 29032542 on Build GRCh38 Gain SH2B1 MIR4517 EIF3C SPNS1 NPIPB9 MIR6862-2 RABEP2 NPIPB8 ATXN2L ATP2A1 SULT1A1 LAT NFATC2IP MIR4721 ATP2A1-AS1 TUFM CD19

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