Hs02425984_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140852710 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2			NP_061734.1
	AF152316.1			AAD43710.1

Target Gene Details

• Entrez Gene ID: 9752
• Gene Name: protocadherin alpha 9
• Gene Aliases: PCDH-ALPHA9
• Location: Chr.5:140847772-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA9	NM_014005.4	1	4939	NP_054724.1
	NM_031857.1			NP_114063.1
	AB002343.1	1	4939
	AF152317.1			AAD43711.1
	AJ007610.1			CAC22257.1
	AK314303.1
	BC104802.1			AAI04803.1
	BC104804.1			AAI04805.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv819207	Chr.5:140842721 - 140859461 on Build GRCh38	Gain	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
nsv10753	Chr.5:140842575 - 140859579 on Build GRCh38	Gain	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
nsv599870	Chr.5:140851652 - 140853802 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA8 PCDHA1
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGB4 PCDHGA1 SLC25A2 PCDHA4 PCDHGA2 PCDHA5 LOC101926905 PCDHGA4 PCDHB11 PCDHB19P PCDHA13 PCDHB10 PCDHA7 PCDHA2 PCDHGB7 PCDHGB2 PCDHA8 PCDHGA11 PCDHB16 PCDHGA3 PCDHB15 PCDHGA8 PCDHA10 PCDHB12 PCDHGA12 PCDHGA7 PCDHGB1 PCDHGA6 PCDHA9 PCDHB1 PCDHGB6 PCDHB3 PCDHGA9 PCDHB14 PCDHB18P PCDHB17P PCDHGA5 PCDHB8 PCDHB2 PCDHGB3 PCDHGA10 PCDHB13 PCDHA11 PCDHGB5 PCDHB5 PCDHA3 PCDHAC1 PCDHA6 PCDHA1 PCDHGB8P PCDHAC2 PCDHB9 TAF7 PCDHB6 PCDHB7 PCDHA12 PCDHB4
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1 PCDHA11
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1 PCDHA11
nsv515909	Chr.5:140848414 - 140852761 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA8 PCDHA1
esv3606958	Chr.5:140842689 - 140859762 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
nsv442962	Chr.5:140844251 - 140864171 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
nsv514324	Chr.5:140844231 - 140859031 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
dgv971n67	Chr.5:140842564 - 140859431 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
dgv724n27	Chr.5:140847633 - 140852761 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA8 PCDHA1
dgv1043e199	Chr.5:140842260 - 140861207 on Build GRCh38	Deletion	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
dgv3182n106	Chr.5:140842552 - 140859353 on Build GRCh38	Deletion	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
esv2730839	Chr.5:140842540 - 140859393 on Build GRCh38	Deletion	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
nsv1135376	Chr.5:140849315 - 140859915 on Build GRCh38	Deletion	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
esv2657537	Chr.5:140850410 - 140855957 on Build GRCh38	Deletion	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	HARS PCDHA4 HARS2 PCDHA5 PCDHA10 PCDHA11 ZMAT2 VTRNA1-2 PCDHA7 PCDHA2 VTRNA1-3 PCDHA3 PCDHA9 PCDHA6 PCDHA8 PCDHA1 VTRNA1-1
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
dgv10097n54	Chr.5:140849850 - 140856743 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
dgv10094n54	Chr.5:140846323 - 140860465 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
esv29977	Chr.5:140843471 - 140856955 on Build GRCh38	Gain	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1
dgv10099n54	Chr.5:140850785 - 140859109 on Build GRCh38	Loss	PCDHA7 PCDHA4 PCDHA2 PCDHA5 PCDHA3 PCDHA9 PCDHA6 PCDHA10 PCDHA8 PCDHA1

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding