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See other CASKIN1 CNV Assays ›
Gene Symbol
CASKIN1
Assay Reference Genome
Location

Chr.16:2181573 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02428107_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 57524

Gene Name:

 CASK interacting protein 1

Gene Aliases:

 ANKS5A

Location:

 Chr.16:2177183-2196464 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 17 - Exon 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CASKIN1 NM_020764.3 NP_065815.1
AB037727.1 BAA92544.1
AF451977.1 AAL49758.1
BC042011.1 AAH42011.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication ARHGDIG MIR6859-4 DECR2 ZNF598 RPUSD1 ERVK13-1 BAIAP3 AXIN1 NUBP2 UNKL LOC105371049 LOC105371184 NTN3 POLR3K SYNGR3 LOC729652 MIR4717 SPSB3 GFER RHOT2 RNF151 NDUFB10 MRPL28 CCNF SNORA64 NHLRC4 NARFL FAM234A LMF1 MIR1225 GNG13 MIR3177 C16orf59 MIR3178 SNHG19 WFIKKN1 PGP UBE2I SNHG9 SOX8 NME4 C16orf91 MIR940 LOC100287175 LOC107987233 CASKIN1 LOC105371045 PIGQ KCTD5 DNASE1L2 RHBDF1 RAB11FIP3 RPL3L ABCA17P HAGHL MIR5587 LOC100134368 MSRB1 NPW MSLN TPSAB1 STUB1 TSC2 FLJ42627 TPSD1 ABCA3 HBA2 RAB26 FBXL16 PRR35 IGFALS NME3 HAGH MIR4516 PRSS29P DDX11L10 SNORA10 MLST8 FAHD1 RAB40C RPL23AP5 IFT140 ATP6V0C HS3ST6 PDIA2 NPRL3 FAM173A E4F1 RHBDL1 LOC105371047 JMJD8 LINC00235 CACNA1H TRAF7 HBQ1 PKD1 HN1L TMEM8A CHTF18 METTL26 GNPTG SSTR5-AS1 SSTR5 PTX4 MIR6511B1 CCDC78 NOXO1 AMDHD2 EME2 MAPK8IP3 ECI1 LOC105371038 TSR3 MIR6767 MCRIP2 WASIR2 RGS11 TBC1D24 SNRNP25 PDPK1 LOC652276 MIR6768 CEMP1 TELO2 MIR662 LOC101929280 MPG MRPS34 TPSB2 MIR3180-5 LUC7L PRR25 LOC105371046 MIR3176 HBA1 SNORA78 LINC00254 RNPS1 CCDC154 WDR90 LOC106660606 TBL3 C1QTNF8 LMF1-AS1 TMEM204 HBM PRSS27 CLCN7 RPS2 SNORD60 WDR24 LOC107984876 SLC9A3R2 METRN TPSG1 CAPN15 CRAMP1 HBZ MIR3677 MEIOB BRICD5 NTHL1
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss MLST8 ZNF598 CASKIN1 DNASE1L2 LOC105371049 MIR3180-5 SYNGR3 GFER NPW RNPS1 E4F1 MIR1225 TBL3 TRAF7 PKD1 TSC2 RAB26 SNORD60 MIR6511B1 SLC9A3R2 NOXO1 ECI1 SNHG19 PGP MIR4516 BRICD5 NTHL1
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MLST8 TRAF7 PKD1 TSC2 CASKIN1 DNASE1L2 RAB26 SNORD60 MIR6511B1 LOC105371049 MIR3180-5 ECI1 SNHG19 PGP MIR4516 E4F1 BRICD5 MIR1225
dgv4863n54 Chr.16:2141733 - 2274302 on Build GRCh38 Loss LOC106660606 MLST8 TRAF7 MIR940 CASKIN1 DNASE1L2 RAB26 SNORD60 ECI1 SNHG19 PGP RNPS1 MIR3677 E4F1 BRICD5
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss TRAF7 SNHG19 PKD1 TSC2 CASKIN1 RAB26 SNORD60 MIR4516 MIR6511B1 LOC105371049 MIR1225 MIR3180-5
dgv456n67 Chr.16:2175295 - 2181915 on Build GRCh38 Gain TRAF7 CASKIN1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MLST8 MIR940 CASKIN1 CEMP1 DNASE1L2 LOC105371049 NTN3 ABCA17P MIR3180-5 ATP6V0C LOC729652 MIR4717 CCNF RNPS1 E4F1 MIR1225 LOC106660606 TRAF7 PKD1 TSC2 ABCA3 RAB26 SNORD60 MIR6511B1 AMDHD2 C16orf59 MIR3178 ECI1 SNHG19 PGP MIR6767 MIR4516 TBC1D24 MIR3677 BRICD5 PDPK1 LOC652276 MIR6768
nsv457351 Chr.16:2156590 - 2274302 on Build GRCh38 Loss LOC106660606 MLST8 ECI1 TRAF7 MIR940 PGP CASKIN1 DNASE1L2 RNPS1 MIR3677 E4F1 BRICD5
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion LOC106660606 MLST8 TRAF7 MIR940 CASKIN1 DNASE1L2 ABCA3 RAB26 SNORD60 MIR4717 ECI1 SNHG19 PGP RNPS1 MIR3677 E4F1 BRICD5

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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