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See other SPSB3 CNV Assays ›
Gene Symbol
SPSB3
Assay Reference Genome
Location

Chr.16:1781509 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02430471_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 90864

Gene Name:

 splA/ryanodine receptor domain and SOCS box containing 3

Gene Aliases:

 C16orf31, SSB3

Location:

 Chr.16:1776712-1782605 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPSB3 NM_001324081.1 NP_001311010.1
NM_080861.3 NP_543137.2
XM_005255673.4 XP_005255730.1
AF403028.1 AAL57347.1
AK074190.1
AK302041.1
BC007588.1
BC024244.1 AAH24244.1
BC041897.1 AAH41897.1
BC047441.1
BI768095.1
BM836743.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv571169 Chr.16:1729694 - 1789022 on Build GRCh38 Loss NME3 EME2 SPSB3 NUBP2 MAPK8IP3 MRPS34 MIR3177
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss HN1L LOC105371046 NME3 EME2 SPSB3 MAPK8IP3 MRPS34 MIR3177 HAGH IFT140 IGFALS NUBP2 CRAMP1
nsv471069 Chr.16:1754356 - 1791032 on Build GRCh38 Loss NME3 EME2 IGFALS SPSB3 NUBP2 MAPK8IP3 MRPS34
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC105371046 EME2 NARFL GFER WDR24 MAPK8IP3 TBL3 METTL26 MIR3177 SNORA64 ECI1 LOC100287175 RGS11 MIR5587 MIR4717 STUB1 SNORD60 LOC105371184 HN1L PDIA2 NME3 ABCA17P LOC101929280 HBZ SNHG9 PRSS27 LMF1 DECR2 LOC105371047 BRICD5 SYNGR3 MIR940 C1QTNF8 MIR6859-4 MIR6511B1 POLR3K MLST8 HBM CLCN7 FAM234A MIR4516 AXIN1 SLC9A3R2 DNASE1L2 MRPS34 NHLRC4 FLJ42627 TRAF7 HBA1 HBA2 PGP NTN3 UNKL MIR3176 LOC100134368 TPSB2 LOC105371045 RPS2 ABCA3 AMDHD2 LUC7L CASKIN1 CHTF18 WASIR2 RAB40C NPW TMEM8A IFT140 MCRIP2 CRAMP1 MIR1225 TSR3 MIR3178 KCTD5 MIR662 HS3ST6 PIGQ ZNF598 C16orf59 HBQ1 ATP6V0C SNHG19 FBXL16 RHBDL1 SSTR5 RNPS1 LOC107984876 LOC729652 CAPN15 NTHL1 SNORA78 LINC00254 IGFALS LOC105371038 SNRNP25 LOC106660606 MIR3677 PRSS29P E4F1 LOC107987233 LINC00235 MRPL28 FAHD1 CCDC78 ARHGDIG RNF151 C16orf91 NME4 CACNA1H SSTR5-AS1 RPL23AP5 MEIOB HAGH CCNF RAB26 MIR3180-5 BAIAP3 TMEM204 MPG JMJD8 TBC1D24 TPSG1 NOXO1 CCDC154 FAM173A TSC2 METRN MSRB1 UBE2I WFIKKN1 PKD1 CEMP1 TPSD1 NPRL3 DDX11L10 RAB11FIP3 PRR35 LOC652276 RHBDF1 GNG13 SNORA10 WDR90 TPSAB1 PDPK1 SPSB3 MIR6767 LMF1-AS1 HAGHL LOC105371049 PTX4 MSLN RPL3L MIR6768 RHOT2 NDUFB10 RPUSD1 ERVK13-1 GNPTG NUBP2 TELO2 PRR25 SOX8
nsv571172 Chr.16:1764390 - 1817039 on Build GRCh38 Loss NME3 EME2 HAGH IGFALS SPSB3 NUBP2 MAPK8IP3 MRPS34
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss HN1L TMEM204 LOC105371046 NME3 EME2 FAHD1 SPSB3 MAPK8IP3 MRPS34 LOC105371047 MIR3177 MEIOB HAGH IFT140 IGFALS NUBP2 TELO2 CRAMP1
nsv827500 Chr.16:1761258 - 1795126 on Build GRCh38 Gain NME3 EME2 IGFALS SPSB3 NUBP2 MAPK8IP3 MRPS34
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion NME3 EME2 IGFALS SPSB3 NUBP2 MAPK8IP3 MRPS34 MIR3177
nsv571171 Chr.16:1757779 - 1804539 on Build GRCh38 Gain+Loss NME3 EME2 IGFALS SPSB3 NUBP2 MAPK8IP3 MRPS34
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss HN1L NME3 EME2 FAHD1 SPSB3 MAPK8IP3 MRPS34 MIR3177 MEIOB HAGH IGFALS NUBP2 CRAMP1
nsv457336 Chr.16:1752231 - 1791032 on Build GRCh38 Loss NME3 EME2 IGFALS SPSB3 NUBP2 MAPK8IP3 MRPS34
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion NME3 EME2 FAHD1 HAGH IGFALS SPSB3 NUBP2 MAPK8IP3 MRPS34 MIR3177

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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