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See other SPSB3 CNV Assays ›
Gene Symbol
SPSB3
Assay Reference Genome
Location

Chr.16:1781509 on build GRCh38
Cytoband
16p13.3
Assay ID Hs02430471_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 90864

Gene Name:

 splA/ryanodine receptor domain and SOCS box containing 3

Gene Aliases:

 C16orf31, SSB3

Location:

 Chr.16:1776712-1782605 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SPSB3 NM_001324081.1 NP_001311010.1
NM_080861.3 NP_543137.2
XM_005255673.4 XP_005255730.1
AF403028.1 AAL57347.1
AK074190.1
AK302041.1
BC007588.1
BC024244.1 AAH24244.1
BC041897.1 AAH41897.1
BC047441.1
BI768095.1
BM836743.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457335 Chr.16:1729694 - 1789022 on Build GRCh38 Loss NME3 MRPS34 NUBP2 EME2 SPSB3 MAPK8IP3 MIR3177
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss NME3 MRPS34 SPSB3 LOC105371046 MAPK8IP3 HN1L HAGH MIR3177 CRAMP1 NUBP2 EME2 IGFALS IFT140
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MRPS34 LMF1-AS1 CAPN15 MEIOB CASKIN1 LOC652276 TELO2 POLR3K LMF1 MIR940 HN1L RPL3L WFIKKN1 PIGQ LOC105371045 LOC105371184 RPS2 DECR2 TRAF7 SOX8 AXIN1 CLCN7 PRR25 MIR4717 SNHG9 SNHG19 RAB11FIP3 SNORA10 SPSB3 HBQ1 STUB1 GNG13 CEMP1 NOXO1 WDR90 TPSG1 MIR3177 LOC107987233 E4F1 PRR35 ERVK13-1 TSR3 SLC9A3R2 TBC1D24 TMEM204 RNPS1 RPL23AP5 SYNGR3 LOC105371046 AMDHD2 CHTF18 PGP WDR24 UBE2I CRAMP1 PRSS27 RNF151 FBXL16 NUBP2 EME2 RHBDL1 MLST8 TPSAB1 TSC2 MIR6768 SSTR5-AS1 LINC00254 UNKL MAPK8IP3 METRN FAHD1 MIR5587 BAIAP3 CCDC78 HAGHL RPUSD1 KCTD5 MSRB1 MIR1225 IFT140 HBM NME3 RHBDF1 LOC107984876 ABCA3 LOC729652 LINC00235 SSTR5 FAM234A MCRIP2 NTHL1 PRSS29P NTN3 NDUFB10 DNASE1L2 MIR6767 IGFALS JMJD8 LOC106660606 MIR3178 SNORA64 CACNA1H DDX11L10 NME4 C16orf91 LOC100134368 C1QTNF8 METTL26 HAGH TPSD1 LOC105371038 SNORA78 ATP6V0C TMEM8A NARFL HS3ST6 MIR3677 LOC101929280 ZNF598 CCNF MIR4516 LOC105371049 RHOT2 HBZ PTX4 ABCA17P MIR6511B1 HBA1 MPG HBA2 SNRNP25 PKD1 LOC100287175 ECI1 MIR6859-4 PDPK1 MSLN GNPTG GFER CCDC154 MRPL28 FLJ42627 MIR3180-5 C16orf59 MIR662 RGS11 RAB26 LOC105371047 TPSB2 LUC7L NHLRC4 FAM173A SNORD60 BRICD5 WASIR2 NPRL3 NPW TBL3 ARHGDIG MIR3176 RAB40C PDIA2
nsv471069 Chr.16:1754356 - 1791032 on Build GRCh38 Loss NME3 MRPS34 NUBP2 EME2 SPSB3 MAPK8IP3 IGFALS
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss NME3 MRPS34 MEIOB SPSB3 LOC105371046 MAPK8IP3 TELO2 LOC105371047 HN1L FAHD1 HAGH MIR3177 CRAMP1 NUBP2 EME2 IGFALS IFT140 TMEM204
nsv571172 Chr.16:1764390 - 1817039 on Build GRCh38 Loss NME3 MRPS34 NUBP2 EME2 SPSB3 MAPK8IP3 IGFALS HAGH
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion NME3 MRPS34 NUBP2 EME2 SPSB3 MAPK8IP3 IGFALS MIR3177
nsv827500 Chr.16:1761258 - 1795126 on Build GRCh38 Gain NME3 MRPS34 NUBP2 EME2 SPSB3 MAPK8IP3 IGFALS
nsv571171 Chr.16:1757779 - 1804539 on Build GRCh38 Gain+Loss NME3 MRPS34 NUBP2 EME2 SPSB3 MAPK8IP3 IGFALS
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss NME3 MRPS34 MEIOB SPSB3 MAPK8IP3 HN1L FAHD1 HAGH MIR3177 CRAMP1 NUBP2 EME2 IGFALS
nsv952900 Chr.16:1724500 - 1827999 on Build GRCh38 Deletion NME3 MRPS34 NUBP2 EME2 SPSB3 MAPK8IP3 FAHD1 IGFALS HAGH MIR3177
nsv571170 Chr.16:1752231 - 1791032 on Build GRCh38 Loss NME3 MRPS34 NUBP2 EME2 SPSB3 MAPK8IP3 IGFALS

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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