Hs02510642_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140841726 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2	1	405	NP_061734.1
	NM_031856.1	1	405	NP_114062.1
	AF152316.1	1	405	AAD43710.1
	AF152486.1	1	405	AAD43747.1
	BC136749.1	1	500
	BC136750.1	1	500

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv980734	Chr.5:140841022 - 140843672 on Build GRCh38	Duplication	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA8
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA7 PCDHA1 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA7 PCDHA1 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8
esv27071	Chr.5:140836128 - 140842469 on Build GRCh38	Loss	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA8
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA10 PCDHA12 PCDHGB4 PCDHB14 PCDHB17P PCDHA4 TAF7 PCDHGA2 PCDHGA4 PCDHB7 PCDHB11 PCDHB5 PCDHA7 PCDHB13 PCDHGB8P PCDHA10 PCDHGA11 PCDHB1 PCDHB10 PCDHA9 PCDHB6 PCDHGB2 PCDHA2 PCDHAC1 PCDHB12 PCDHA6 PCDHB4 PCDHGB3 PCDHA5 PCDHGA1 PCDHGA7 SLC25A2 PCDHGA9 PCDHA11 PCDHB8 PCDHGB6 PCDHB9 PCDHGA8 PCDHB16 LOC101926905 PCDHB18P PCDHB15 PCDHGB5 PCDHA3 PCDHGA5 PCDHA1 PCDHAC2 PCDHB2 PCDHGB1 PCDHA13 PCDHGA12 PCDHB19P PCDHB3 PCDHGA6 PCDHGA3 PCDHA8 PCDHGB7
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	PCDHA7 HARS ZMAT2 PCDHA6 PCDHA10 VTRNA1-2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 HARS2 PCDHA11 PCDHA1 VTRNA1-1 VTRNA1-3 PCDHA2 PCDHA8
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA7 PCDHA1 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8
dgv1652e212	Chr.5:140839141 - 140864158 on Build GRCh38	Loss	PCDHA7 PCDHA1 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA7 PCDHA11 PCDHA1 PCDHA6 PCDHA10 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8
esv3606957	Chr.5:140836164 - 140842460 on Build GRCh38	Gain	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA8
dgv970n67	Chr.5:140784829 - 140843644 on Build GRCh38	Gain	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA8
nsv436885	Chr.5:140835434 - 140846096 on Build GRCh38	Insertion	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA8
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA7 PCDHA1 PCDHA6 PCDHA2 PCDHA3 PCDHA4 PCDHA5 PCDHA9 PCDHA8

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding