Hs02510642_cn

• Gene Symbol: PCDHA1
• Assay Reference Genome Location: Chr.5:140841726 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 56147
• Gene Name: protocadherin alpha 1
• Gene Aliases: PCDH-ALPHA1
• Location: Chr.5:140786136-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA1	NM_018900.3			NP_061723.1
	NM_031411.2			NP_113599.1
	AF152305.1			AAD43699.1
	AF169695.1			AAF89692.1

Target Gene Details

• Entrez Gene ID: 56146
• Gene Name: protocadherin alpha 2
• Gene Aliases: PCDH-ALPHA2
• Location: Chr.5:140794859-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA2	NM_018905.2			NP_061728.1
	AF152310.1			AAD43704.1

Target Gene Details

• Entrez Gene ID: 56145
• Gene Name: protocadherin alpha 3
• Gene Aliases: PCDH-ALPHA3
• Location: Chr.5:140801198-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA3	NM_018906.2			NP_061729.1
	AF152311.1			AAD43705.1

Target Gene Details

• Entrez Gene ID: 56144
• Gene Name: protocadherin alpha 4
• Gene Aliases: CNR1, CNRN1, CRNR1, PCDH-ALPHA4
• Location: Chr.5:140807074-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA4	NM_018907.3			NP_061730.1
	AB208925.1			BAD92162.1
	AF152312.1			AAD43706.1

Target Gene Details

• Entrez Gene ID: 56143
• Gene Name: protocadherin alpha 5
• Gene Aliases: CNR6, CNRN6, CNRS6, CRNR6, PCDH-ALPHA5
• Location: Chr.5:140821776-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA5	NM_018908.2			NP_061731.1
	AB208863.1			BAD92100.1
	AF152313.1			AAD43707.1
	BC033735.1			AAH33735.1

Target Gene Details

• Entrez Gene ID: 56142
• Gene Name: protocadherin alpha 6
• Gene Aliases: CNR2, CNRN2, CNRS2, CRNR2, PCDH-ALPHA6
• Location: Chr.5:140827922-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA6	NM_018909.3			NP_061732.1
	NM_031849.2			NP_114037.1
	AB209205.1			BAD92442.1
	AF152314.1			AAD43708.1
	AF169694.1			AAF89691.1
	BC036674.2			AAH36674.1

Target Gene Details

• Entrez Gene ID: 56141
• Gene Name: protocadherin alpha 7
• Gene Aliases: CNR4, CNRN4, CNRS4, CRNR4, PCDH-ALPHA7
• Location: Chr.5:140834384-141012344 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA7	NM_018910.2			NP_061733.1
	AF152315.1			AAD43709.1

Target Gene Details

• Entrez Gene ID: 56140
• Gene Name: protocadherin alpha 8
• Gene Aliases: PCDH-ALPHA8
• Location: Chr.5:140841322-141012344 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHA8	NM_018911.2	1	405	NP_061734.1
	NM_031856.1	1	405	NP_114062.1
	AF152316.1	1	405	AAD43710.1
	AF152486.1	1	405	AAD43747.1
	BC136749.1	1	500
	BC136750.1	1	500

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv599839	Chr.5:140837299 - 140848579 on Build GRCh38	Gain	PCDHA3 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2
nsv980734	Chr.5:140841022 - 140843672 on Build GRCh38	Duplication	PCDHA3 PCDHA8 PCDHA7 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2
esv33939	Chr.5:140837491 - 140859238 on Build GRCh38	Gain+Loss	PCDHA3 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA10 PCDHA1 PCDHA2
dgv1651e212	Chr.5:140838196 - 140852242 on Build GRCh38	Loss	PCDHA3 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2
esv3566721	Chr.5:140840563 - 140861415 on Build GRCh38	Deletion	PCDHA3 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA10 PCDHA1 PCDHA2
nsv1024237	Chr.5:140810775 - 140852242 on Build GRCh38	Loss	PCDHA3 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2
esv27071	Chr.5:140836128 - 140842469 on Build GRCh38	Loss	PCDHA3 PCDHA8 PCDHA7 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHGA3 PCDHA7 PCDHB5 SLC25A2 PCDHGB5 PCDHAC1 PCDHGB6 PCDHB1 PCDHGA12 PCDHB10 PCDHA2 PCDHB11 PCDHGA6 PCDHA5 PCDHGB2 PCDHB17P PCDHA4 TAF7 PCDHA1 PCDHB3 PCDHGB4 PCDHA10 PCDHAC2 PCDHB12 PCDHGA4 PCDHB14 PCDHGA1 PCDHB2 PCDHGB1 PCDHB6 PCDHB4 PCDHA12 PCDHGA5 PCDHA11 LOC101926905 PCDHB13 PCDHB7 PCDHA8 PCDHA13 PCDHB15 PCDHB9 PCDHGA11 PCDHGB8P PCDHGA7 PCDHB8 PCDHGA2 PCDHGA8 PCDHGB3 PCDHB18P PCDHA3 PCDHB19P PCDHGB7 PCDHB16 PCDHA9 PCDHGA10 PCDHA6 PCDHGA9
nsv830508	Chr.5:140675388 - 140869073 on Build GRCh38	Loss	VTRNA1-2 VTRNA1-1 HARS PCDHA7 PCDHA5 PCDHA4 HARS2 PCDHA1 PCDHA3 PCDHA11 ZMAT2 PCDHA8 PCDHA9 PCDHA6 VTRNA1-3 PCDHA10 PCDHA2
esv2861013	Chr.5:140834461 - 140848573 on Build GRCh38	Duplication	PCDHA3 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2
dgv138e203	Chr.5:140838209 - 140874533 on Build GRCh38	Loss	PCDHA3 PCDHA11 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA10 PCDHA1 PCDHA2
dgv1653e212	Chr.5:140839141 - 140874132 on Build GRCh38	Loss	PCDHA3 PCDHA11 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA10 PCDHA1 PCDHA2
nsv599841	Chr.5:140841349 - 140856513 on Build GRCh38	Loss	PCDHA3 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA10 PCDHA1 PCDHA2
esv3606956	Chr.5:140836164 - 140842460 on Build GRCh38	Loss	PCDHA3 PCDHA8 PCDHA7 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2
dgv970n67	Chr.5:140784829 - 140843644 on Build GRCh38	Gain	PCDHA3 PCDHA8 PCDHA7 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2
nsv436885	Chr.5:140835434 - 140846096 on Build GRCh38	Insertion	PCDHA3 PCDHA8 PCDHA7 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2
dgv10092n54	Chr.5:140835344 - 140850785 on Build GRCh38	Loss	PCDHA3 PCDHA8 PCDHA7 PCDHA9 PCDHA5 PCDHA6 PCDHA4 PCDHA1 PCDHA2

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
nervous system development

Function(s)

calcium ion binding
protein binding